Strain Fitness in Shewanella oneidensis MR-1 around SO3058

Experiment: syringaldehyde 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	syringaldehyde 1 mM
3,170,000	+		SO3057	0.43	+1.0
3,170,007	+		SO3057	0.44	+0.7
3,170,007	+		SO3057	0.44	-0.5
3,170,015	-		SO3057	0.44	-0.1
3,170,015	-		SO3057	0.44	+0.2
3,170,299	+		SO3057	0.62	+0.3
3,170,307	-		SO3057	0.63	-0.5
3,170,346	-		SO3057	0.65	+1.0
3,170,346	-		SO3057	0.65	-0.1
3,170,355	+		SO3057	0.66	-0.1
3,170,459	+		SO3057	0.73	+1.3
3,170,484	-		SO3057	0.74	+0.5
3,170,559	+		SO3057	0.79	+0.6
3,170,591	-		SO3057	0.81	+0.8
3,170,601	-		SO3057	0.82	-0.8
3,170,719	-		SO3057	0.89	-0.9
3,170,719	-		SO3057	0.89	-0.6
3,170,912	-				+0.3
3,171,029	+				+0.8
3,171,029	+				-0.0
3,171,039	+				-1.3
3,171,059	-				+0.8
3,171,174	-		SO3058	0.12	+0.3
3,171,232	-		SO3058	0.16	-0.3
3,171,232	-		SO3058	0.16	+0.6
3,171,232	-		SO3058	0.16	+0.1
3,171,303	+		SO3058	0.20	-0.5
3,171,394	-		SO3058	0.26	+0.1
3,171,405	+		SO3058	0.27	+1.2
3,171,406	+		SO3058	0.27	+0.1
3,171,580	+		SO3058	0.38	+1.4
3,171,724	+		SO3058	0.47	-0.2
3,171,724	+		SO3058	0.47	-0.5
3,171,904	+		SO3058	0.59	+0.4
3,171,904	+		SO3058	0.59	+0.2
3,171,993	+		SO3058	0.65	+0.6
3,171,993	+		SO3058	0.65	+0.6
3,172,001	-		SO3058	0.65	+0.0
3,172,017	-		SO3058	0.66	-0.0
3,172,073	+		SO3058	0.70	+0.2
3,172,114	+		SO3058	0.72	-0.2
3,172,124	+		SO3058	0.73	+0.1
3,172,140	+		SO3058	0.74	+0.2
3,172,269	+		SO3058	0.82	+1.2
3,172,479	-				+0.4
3,172,578	+				-0.3
3,172,597	+				+0.6
3,172,619	+				-0.3
3,172,772	+				-1.3
3,172,788	-				+0.4
3,172,909	-		SO3059	0.13	+0.3
3,172,968	+		SO3059	0.17	+1.1
3,173,163	+		SO3059	0.30	+0.5
3,173,163	+		SO3059	0.30	-0.3
3,173,171	-		SO3059	0.30	-0.3
3,173,171	-		SO3059	0.30	-0.8
3,173,171	-		SO3059	0.30	+0.5
3,173,181	-		SO3059	0.31	-0.6
3,173,537	-		SO3059	0.54	-0.8