Strain Fitness in Shewanella oneidensis MR-1 around SO3052

Experiment: syringaldehyde 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	syringaldehyde 1 mM
3,163,478	-		SO3051	0.24	-0.5
3,163,507	+		SO3051	0.27	-0.4
3,163,590	-		SO3051	0.35	-0.4
3,163,653	-		SO3051	0.41	-0.9
3,163,675	-		SO3051	0.43	+0.6
3,163,713	+		SO3051	0.47	+2.1
3,163,820	+		SO3051	0.58	-0.3
3,163,820	+		SO3051	0.58	-0.3
3,163,820	+		SO3051	0.58	+0.2
3,163,849	+		SO3051	0.61	-0.0
3,164,007	+		SO3051	0.76	+0.3
3,164,040	+		SO3051	0.79	-0.7
3,164,081	-		SO3051	0.84	-0.2
3,164,170	+				+0.3
3,164,187	+				+0.2
3,164,213	-				+0.8
3,164,251	-				-1.5
3,164,279	-				-0.5
3,164,426	+				+0.1
3,164,483	+				-0.1
3,164,491	-				-0.1
3,164,529	-				+0.1
3,164,583	+				-0.5
3,164,583	+				-0.3
3,164,583	+				+0.3
3,164,583	+				-0.4
3,164,583	+				-0.3
3,164,591	-				+1.2
3,164,591	-				+0.2
3,164,656	-		SO3052	0.11	+0.4
3,164,759	+		SO3052	0.17	+0.7
3,164,851	+		SO3052	0.22	-1.0
3,164,859	-		SO3052	0.23	-0.0
3,165,014	-		SO3052	0.32	-0.4
3,165,054	+		SO3052	0.34	+0.6
3,165,145	+		SO3052	0.39	-0.0
3,165,159	-		SO3052	0.40	+0.3
3,165,433	-		SO3052	0.56	+0.8
3,165,433	-		SO3052	0.56	+1.3
3,165,452	+		SO3052	0.57	+0.7
3,165,523	+		SO3052	0.61	+0.9
3,165,531	-		SO3052	0.61	+0.1
3,165,637	-		SO3052	0.67	+0.5
3,165,683	-		SO3052	0.70	+0.1
3,165,703	-		SO3052	0.71	-0.1
3,165,753	+		SO3052	0.74	+0.7
3,165,800	-		SO3052	0.77	+0.5
3,165,822	+		SO3052	0.78	+0.4
3,165,831	-		SO3052	0.79	+0.2
3,165,855	+		SO3052	0.80	-1.4
3,166,002	+		SO3052	0.88	+0.2
3,166,002	+		SO3052	0.88	+0.0
3,166,010	+		SO3052	0.89	+0.0
3,166,010	-		SO3052	0.89	-0.9
3,166,094	+				-0.1
3,166,216	+				-0.1
3,166,233	+				-1.2
3,166,312	+				+0.7
3,166,312	+				-0.2
3,166,312	+				+0.1
3,166,355	-				-0.7
3,166,355	-				-0.5
3,166,355	-				+0.7
3,166,355	-				-0.8
3,166,360	-				-0.1
3,166,557	-				-0.6
3,166,573	+				+0.4
3,166,584	+				-1.2
3,166,606	+				+0.5
3,166,674	+		SO3054	0.17	-0.1
3,166,674	+		SO3054	0.17	+0.0
3,166,674	+		SO3054	0.17	+0.1
3,166,674	+		SO3054	0.17	+0.0
3,166,682	-		SO3054	0.18	+0.2
3,166,742	-		SO3054	0.28	+0.3
3,166,781	-		SO3054	0.34	-0.8
3,166,840	+		SO3054	0.43	-0.0