Strain Fitness in Shewanella oneidensis MR-1 around SO2977

Experiment: syringaldehyde 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	syringaldehyde 1 mM
3,105,491	+				-1.7
3,105,565	-		SO2975	0.19	+0.3
3,105,565	-		SO2975	0.19	+0.6
3,105,620	-		SO2975	0.36	+1.2
3,105,639	+		SO2975	0.41	-0.2
3,105,641	+		SO2975	0.42	+0.7
3,105,641	+		SO2975	0.42	-0.2
3,105,641	+		SO2975	0.42	+0.6
3,105,641	+		SO2975	0.42	-0.6
3,105,641	+		SO2975	0.42	+0.2
3,105,641	+		SO2975	0.42	-0.2
3,105,647	-		SO2975	0.44	-0.5
3,105,649	-		SO2975	0.44	+0.0
3,105,664	+		SO2975	0.49	+1.3
3,105,664	+		SO2975	0.49	+0.1
3,105,672	-		SO2975	0.51	+0.4
3,105,692	-		SO2975	0.57	-0.2
3,105,692	-		SO2975	0.57	+1.4
3,105,692	-		SO2975	0.57	+0.3
3,105,705	-		SO2975	0.61	-0.9
3,105,727	+		SO2975	0.68	-0.5
3,105,727	+		SO2975	0.68	-0.4
3,105,735	-		SO2975	0.70	+0.3
3,105,735	-		SO2975	0.70	+0.3
3,105,740	-		SO2975	0.71	-0.8
3,105,744	+		SO2975	0.73	+0.0
3,105,781	+		SO2975	0.84	+0.0
3,105,799	-		SO2975	0.89	+0.4
3,105,821	-				+0.1
3,105,924	-		SO2976	0.19	+0.6
3,105,931	-		SO2976	0.22	-0.3
3,105,962	+		SO2976	0.31	-0.7
3,105,962	+		SO2976	0.31	+0.7
3,105,962	+		SO2976	0.31	+0.3
3,105,962	+		SO2976	0.31	+0.2
3,105,962	+		SO2976	0.31	-0.5
3,105,970	-		SO2976	0.34	+0.5
3,105,970	-		SO2976	0.34	+0.0
3,105,970	-		SO2976	0.34	+0.5
3,106,035	+		SO2976	0.54	-0.5
3,106,069	+		SO2976	0.64	-1.5
3,106,082	-		SO2976	0.68	-0.6
3,106,114	+		SO2976	0.78	+0.0
3,106,364	+				+0.5
3,106,418	-				+0.1
3,106,425	+				-0.5
3,106,425	+				+0.4
3,106,425	+				+0.2
3,106,433	-				+0.5
3,106,433	-				+0.2
3,106,433	-				-0.3
3,106,537	+		SO2977	0.31	-0.2
3,106,613	-		SO2977	0.56	-0.3
3,106,635	-		SO2977	0.63	+0.3
3,106,637	+		SO2977	0.64	+0.8
3,106,637	+		SO2977	0.64	-0.5
3,106,637	+		SO2977	0.64	-0.1
3,106,637	+		SO2977	0.64	+0.3
3,106,637	+		SO2977	0.64	-0.0
3,106,645	-		SO2977	0.67	-0.1
3,106,645	-		SO2977	0.67	-0.6
3,106,645	-		SO2977	0.67	+0.1
3,106,645	-		SO2977	0.67	+0.1
3,106,690	-		SO2977	0.81	-0.1
3,106,750	+				-0.1
3,106,750	+				+0.2
3,106,758	-				-0.5
3,106,973	-		SO2978	0.14	+0.3
3,106,988	-		SO2978	0.16	-0.7
3,107,057	-		SO2978	0.21	+0.8
3,107,134	+		SO2978	0.28	+1.3
3,107,135	+		SO2978	0.28	+0.5
3,107,172	-		SO2978	0.31	-1.4
3,107,287	+		SO2978	0.41	-0.4
3,107,295	-		SO2978	0.41	-0.6
3,107,424	+		SO2978	0.52	+0.1
3,107,432	-		SO2978	0.53	-0.4
3,107,446	+		SO2978	0.54	+0.6
3,107,482	-		SO2978	0.57	+0.7
3,107,497	+		SO2978	0.58	+0.3
3,107,497	+		SO2978	0.58	+1.4
3,107,497	+		SO2978	0.58	-0.9
3,107,505	-		SO2978	0.59	+0.6
3,107,505	-		SO2978	0.59	+1.1
3,107,505	-		SO2978	0.59	-0.4
3,107,505	-		SO2978	0.59	+0.2
3,107,601	-		SO2978	0.67	+0.4
3,107,601	-		SO2978	0.67	-2.1
3,107,616	+		SO2978	0.68	-0.5
3,107,675	+		SO2978	0.73	+0.7
3,107,708	-		SO2978	0.76	+0.2