Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2671 and SO2672 overlap by 1 nucleotides SO2672 and SO2673 overlap by 16 nucleotides SO2673 and SO2674 overlap by 1 nucleotides SO2674 and SO2675 overlap by 1 nucleotides SO2675 and SO2676 are separated by 8 nucleotides SO2676 and SO2677 are separated by 9 nucleotides
SO2671: SO2671 - conserved hypothetical protein (NCBI ptt file), at 2,798,918 to 2,799,508
SO2671
SO2672: SO2672 - conserved hypothetical protein (NCBI ptt file), at 2,799,508 to 2,799,768
SO2672
SO2673: SO2673 - hypothetical protein (NCBI ptt file), at 2,799,753 to 2,800,361
SO2673
SO2674: SO2674 - C4-type zinc finger protein, DksA/TraR family (NCBI ptt file), at 2,800,361 to 2,800,576
SO2674
SO2675: SO2675 - conserved hypothetical protein (NCBI ptt file), at 2,800,576 to 2,800,878
SO2675
SO2676: SO2676 - conserved hypothetical protein (NCBI ptt file), at 2,800,887 to 2,801,177
SO2676
SO2677: SO2677 - conserved hypothetical protein (NCBI ptt file), at 2,801,187 to 2,801,768
SO2677
Position (kb)
2800
2801 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2799.467 kb on - strand at 2799.500 kb on + strand at 2799.563 kb on - strand, within SO2672 at 2799.611 kb on + strand, within SO2672 at 2799.662 kb on + strand, within SO2672 at 2799.662 kb on + strand, within SO2672 at 2799.670 kb on - strand, within SO2672 at 2799.670 kb on - strand, within SO2672 at 2799.670 kb on - strand, within SO2672 at 2799.670 kb on - strand, within SO2672 at 2799.670 kb on - strand, within SO2672 at 2799.670 kb on - strand, within SO2672 at 2799.797 kb on + strand at 2799.829 kb on - strand, within SO2673 at 2799.980 kb on + strand, within SO2673 at 2800.200 kb on - strand, within SO2673 at 2800.204 kb on + strand, within SO2673 at 2800.204 kb on + strand, within SO2673 at 2800.276 kb on + strand, within SO2673 at 2800.284 kb on - strand, within SO2673 at 2800.323 kb on + strand at 2800.372 kb on + strand at 2800.609 kb on + strand, within SO2675 at 2800.653 kb on + strand, within SO2675 at 2800.664 kb on + strand, within SO2675 at 2800.675 kb on + strand, within SO2675 at 2800.683 kb on - strand, within SO2675 at 2800.723 kb on + strand, within SO2675 at 2800.723 kb on + strand, within SO2675 at 2800.725 kb on + strand, within SO2675 at 2800.725 kb on + strand, within SO2675 at 2800.825 kb on + strand, within SO2675 at 2800.825 kb on + strand, within SO2675 at 2800.833 kb on - strand, within SO2675 at 2800.914 kb on + strand at 2800.922 kb on - strand, within SO2676 at 2801.118 kb on + strand, within SO2676 at 2801.136 kb on + strand, within SO2676 at 2801.136 kb on + strand, within SO2676 at 2801.144 kb on - strand, within SO2676 at 2801.144 kb on - strand, within SO2676 at 2801.171 kb on + strand at 2801.179 kb on - strand at 2801.432 kb on + strand, within SO2677 at 2801.432 kb on + strand, within SO2677 at 2801.472 kb on - strand, within SO2677 at 2801.501 kb on + strand, within SO2677 at 2801.526 kb on - strand, within SO2677
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,799,467 - +1.5 2,799,500 + -0.8 2,799,563 - SO2672 0.21 +0.8 2,799,611 + SO2672 0.39 +0.6 2,799,662 + SO2672 0.59 +0.0 2,799,662 + SO2672 0.59 -0.8 2,799,670 - SO2672 0.62 +1.8 2,799,670 - SO2672 0.62 +0.7 2,799,670 - SO2672 0.62 +1.4 2,799,670 - SO2672 0.62 +0.6 2,799,670 - SO2672 0.62 +0.3 2,799,670 - SO2672 0.62 +1.4 2,799,797 + +1.1 2,799,829 - SO2673 0.12 +0.4 2,799,980 + SO2673 0.37 +0.9 2,800,200 - SO2673 0.73 +0.6 2,800,204 + SO2673 0.74 -0.1 2,800,204 + SO2673 0.74 +0.9 2,800,276 + SO2673 0.86 -0.8 2,800,284 - SO2673 0.87 +0.1 2,800,323 + -1.0 2,800,372 + +0.1 2,800,609 + SO2675 0.11 -0.8 2,800,653 + SO2675 0.25 +1.2 2,800,664 + SO2675 0.29 -0.0 2,800,675 + SO2675 0.33 -0.0 2,800,683 - SO2675 0.35 +3.0 2,800,723 + SO2675 0.49 +2.5 2,800,723 + SO2675 0.49 +1.2 2,800,725 + SO2675 0.49 +1.6 2,800,725 + SO2675 0.49 +1.3 2,800,825 + SO2675 0.82 +1.9 2,800,825 + SO2675 0.82 +0.1 2,800,833 - SO2675 0.85 -2.8 2,800,914 + -0.1 2,800,922 - SO2676 0.12 -0.1 2,801,118 + SO2676 0.79 -0.8 2,801,136 + SO2676 0.86 +0.0 2,801,136 + SO2676 0.86 -0.2 2,801,144 - SO2676 0.88 -0.1 2,801,144 - SO2676 0.88 +0.0 2,801,171 + +0.6 2,801,179 - +0.1 2,801,432 + SO2677 0.42 -0.4 2,801,432 + SO2677 0.42 +0.8 2,801,472 - SO2677 0.49 +0.7 2,801,501 + SO2677 0.54 +0.4 2,801,526 - SO2677 0.58 +0.1
Or see this region's nucleotide sequence