Strain Fitness in Shewanella oneidensis MR-1 around SO0968

Experiment: syringaldehyde 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	syringaldehyde 1 mM
999,747	-				+0.2
999,763	+				-1.6
999,763	+				+0.6
999,763	+				-1.2
999,771	-		SO0967	0.11	+0.2
999,771	-		SO0967	0.11	-0.2
999,888	+		SO0967	0.33	-0.3
999,929	-		SO0967	0.41	+0.3
999,929	-		SO0967	0.41	+0.7
999,953	-		SO0967	0.46	+0.1
999,974	-		SO0967	0.50	+0.1
1,000,008	+		SO0967	0.56	+0.4
1,000,030	-		SO0967	0.61	+1.2
1,000,056	+		SO0967	0.66	-1.7
1,000,063	+		SO0967	0.67	+0.2
1,000,064	-		SO0967	0.67	-0.2
1,000,191	-				-0.1
1,000,243	+				+0.1
1,000,259	+				-0.1
1,000,273	+				-0.5
1,000,286	+				-0.1
1,000,394	+				+0.2
1,000,516	+	ldhA	SO0968	0.22	+1.1
1,000,596	+	ldhA	SO0968	0.30	+1.7
1,000,614	-	ldhA	SO0968	0.32	+1.7
1,000,614	-	ldhA	SO0968	0.32	+0.3
1,000,651	+	ldhA	SO0968	0.35	+0.1
1,000,666	-	ldhA	SO0968	0.37	+0.5
1,000,687	-	ldhA	SO0968	0.39	-0.3
1,000,728	-	ldhA	SO0968	0.43	-0.0
1,000,755	+	ldhA	SO0968	0.46	+0.7
1,000,755	+	ldhA	SO0968	0.46	+0.5
1,000,755	+	ldhA	SO0968	0.46	-0.1
1,000,763	-	ldhA	SO0968	0.47	-1.1
1,000,768	+	ldhA	SO0968	0.47	-0.6
1,000,768	+	ldhA	SO0968	0.47	+1.0
1,000,768	+	ldhA	SO0968	0.47	+0.3
1,000,776	-	ldhA	SO0968	0.48	+1.0
1,000,776	-	ldhA	SO0968	0.48	+0.8
1,000,776	-	ldhA	SO0968	0.48	+0.1
1,000,777	-	ldhA	SO0968	0.48	+1.0
1,000,807	+	ldhA	SO0968	0.51	+0.2
1,000,807	+	ldhA	SO0968	0.51	+0.3
1,001,026	-	ldhA	SO0968	0.73	-0.3
1,001,041	+	ldhA	SO0968	0.75	-0.4
1,001,051	+	ldhA	SO0968	0.76	+0.5
1,001,051	+	ldhA	SO0968	0.76	+1.3
1,001,059	-	ldhA	SO0968	0.77	-0.3
1,001,105	+	ldhA	SO0968	0.81	-0.3
1,001,186	-	ldhA	SO0968	0.89	-1.8
1,001,299	+				-0.7
1,001,299	+				+0.9
1,001,304	+				+0.1
1,001,307	-				-0.9
1,001,307	-				+0.5
1,001,307	-				+0.3
1,001,312	-				+0.5
1,001,326	+				-0.5
1,001,346	+				+0.2
1,001,449	+				+0.6
1,001,497	+				+0.8
1,001,497	+				+1.4
1,001,578	+				-0.3
1,001,628	-				+0.3
1,001,645	-				+1.1
1,001,660	+				+0.4
1,001,668	-				+0.7
1,001,668	-				+0.3
1,001,844	+		SO0970	0.17	-0.0
1,001,846	+		SO0970	0.17	+1.2
1,001,854	-		SO0970	0.18	+0.2
1,001,854	-		SO0970	0.18	+0.6
1,001,942	-		SO0970	0.23	+1.6
1,001,970	-		SO0970	0.24	-0.4
1,001,972	+		SO0970	0.24	-0.3
1,002,170	-		SO0970	0.36	-0.2
1,002,199	+		SO0970	0.37	+0.7
1,002,211	+		SO0970	0.38	-0.8
1,002,242	-		SO0970	0.40	+0.8
1,002,250	+		SO0970	0.40	+1.1
1,002,258	-		SO0970	0.40	+0.4