Strain Fitness in Shewanella oneidensis MR-1 around SO0025

Experiment: syringaldehyde 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	syringaldehyde 1 mM
29,580	-	trkH-1	SO0024	0.33	+0.1
29,627	-	trkH-1	SO0024	0.36	-0.3
29,652	-	trkH-1	SO0024	0.38	-0.5
29,858	-	trkH-1	SO0024	0.52	-0.4
29,886	+	trkH-1	SO0024	0.54	+0.4
29,904	+	trkH-1	SO0024	0.55	-1.7
29,912	-	trkH-1	SO0024	0.56	-0.6
29,919	+	trkH-1	SO0024	0.56	+0.7
30,015	+	trkH-1	SO0024	0.63	-1.0
30,023	-	trkH-1	SO0024	0.63	+0.4
30,062	+	trkH-1	SO0024	0.66	+0.3
30,064	+	trkH-1	SO0024	0.66	-0.1
30,072	-	trkH-1	SO0024	0.67	-0.7
30,162	+	trkH-1	SO0024	0.73	-0.7
30,162	+	trkH-1	SO0024	0.73	+0.9
30,162	+	trkH-1	SO0024	0.73	-0.3
30,163	+	trkH-1	SO0024	0.73	-0.5
30,163	+	trkH-1	SO0024	0.73	-0.7
30,171	-	trkH-1	SO0024	0.74	-0.2
30,171	-	trkH-1	SO0024	0.74	+0.6
30,171	-	trkH-1	SO0024	0.74	-2.5
30,210	+	trkH-1	SO0024	0.76	-0.2
30,334	+				+1.8
30,419	+				+0.4
30,426	+				+0.1
30,427	-				-0.5
30,428	-				-0.1
30,432	-				-1.2
30,450	+				+0.3
30,463	+				-0.3
30,483	+				-0.4
30,486	-				+1.0
30,486	-				-0.6
30,617	+		SO0025	0.11	-0.6
30,664	+		SO0025	0.20	-0.0
30,664	+		SO0025	0.20	+0.6
30,664	+		SO0025	0.20	-0.3
30,664	+		SO0025	0.20	-0.6
30,664	+		SO0025	0.20	+0.5
30,672	-		SO0025	0.22	+0.0
30,677	-		SO0025	0.23	+0.4
30,681	+		SO0025	0.23	-0.7
30,681	+		SO0025	0.23	-1.1
30,681	+		SO0025	0.23	-1.5
30,681	+		SO0025	0.23	+0.1
30,689	+		SO0025	0.25	-0.4
30,689	-		SO0025	0.25	-1.3
30,689	-		SO0025	0.25	-0.4
30,689	-		SO0025	0.25	-0.7
30,689	-		SO0025	0.25	-1.2
30,689	-		SO0025	0.25	-1.1
30,707	+		SO0025	0.28	-0.7
30,735	+		SO0025	0.34	-0.6
30,743	-		SO0025	0.35	-1.2
30,743	-		SO0025	0.35	-1.0
30,745	+		SO0025	0.36	-0.3
30,748	-		SO0025	0.36	-2.2
30,753	-		SO0025	0.37	+0.4
30,909	+		SO0025	0.67	+0.1
30,984	-		SO0025	0.81	-0.1
31,029	-		SO0025	0.90	-0.9
31,029	-		SO0025	0.90	-0.9
31,099	+				+0.8
31,106	-				-0.1
31,126	+				+0.1
31,134	-				+0.3
31,152	-				-0.5
31,173	-				+0.2
31,210	-		SO0026	0.20	+0.2
31,232	+		SO0026	0.28	-0.1
31,269	+		SO0026	0.39	-0.2
31,338	-		SO0026	0.62	-0.6
31,388	+		SO0026	0.78	-1.2
31,516	+				+0.2
31,516	+				+0.3
31,589	+				+0.2
31,673	+				+0.1
31,729	+		SO0027	0.13	+0.1
31,734	+		SO0027	0.14	+0.9
31,737	-		SO0027	0.15	-0.2
31,737	-		SO0027	0.15	-0.4
31,744	+		SO0027	0.16	-1.1
31,752	-		SO0027	0.17	-1.2
31,752	-		SO0027	0.17	-0.0
31,759	-		SO0027	0.19	+1.1
31,764	+		SO0027	0.19	-0.9
31,823	+		SO0027	0.30	+1.1
31,844	-		SO0027	0.34	-0.7
31,856	-		SO0027	0.36	-0.1
31,875	+		SO0027	0.39	-0.8
31,881	+		SO0027	0.41	-1.4
31,884	+		SO0027	0.41	+0.8
31,892	-		SO0027	0.43	-2.5
31,898	-		SO0027	0.44	+0.6
31,936	+		SO0027	0.50	+0.0
32,001	+		SO0027	0.62	+0.1
32,016	+		SO0027	0.65	+0.2
32,051	+		SO0027	0.71	-0.1
32,059	-		SO0027	0.73	-0.1
32,061	+		SO0027	0.73	+0.3
32,069	-		SO0027	0.74	-1.0