Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003460

Experiment: PM with 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003450 and TX73_003455 are separated by 2 nucleotidesTX73_003455 and TX73_003460 are separated by 85 nucleotidesTX73_003460 and TX73_003465 are separated by 176 nucleotides TX73_003450: TX73_003450 - branched-chain amino acid ABC transporter ATP-binding protein/permease, at 733,629 to 735,416 _003450 TX73_003455: TX73_003455 - branched-chain amino acid ABC transporter permease, at 735,419 to 736,279 _003455 TX73_003460: TX73_003460 - ABC transporter substrate-binding protein, at 736,365 to 737,543 _003460 TX73_003465: TX73_003465 - bifunctional 4-hydroxybenzoate--CoA/benzoate--CoA ligase, at 737,720 to 739,339 _003465 Position (kb) 736 737 738Strain fitness (log2 ratio) -2 -1 0 1 2at 735.376 kb on + strandat 735.407 kb on - strandat 735.408 kb on + strandat 735.457 kb on + strandat 735.507 kb on - strand, within TX73_003455at 735.512 kb on - strand, within TX73_003455at 735.637 kb on - strand, within TX73_003455at 735.732 kb on - strand, within TX73_003455at 735.869 kb on + strand, within TX73_003455at 735.869 kb on + strand, within TX73_003455at 736.016 kb on + strand, within TX73_003455at 736.016 kb on + strand, within TX73_003455at 736.024 kb on - strand, within TX73_003455at 736.037 kb on - strand, within TX73_003455at 736.202 kb on + strandat 736.204 kb on - strandat 736.210 kb on - strandat 736.246 kb on - strandat 736.247 kb on - strandat 736.248 kb on - strandat 736.267 kb on + strandat 736.267 kb on + strandat 736.275 kb on - strandat 736.275 kb on - strandat 736.303 kb on + strandat 736.306 kb on - strandat 736.340 kb on + strandat 736.369 kb on - strandat 736.435 kb on - strandat 736.545 kb on - strand, within TX73_003460at 736.614 kb on + strand, within TX73_003460at 736.614 kb on + strand, within TX73_003460at 736.619 kb on + strand, within TX73_003460at 736.630 kb on - strand, within TX73_003460at 736.644 kb on + strand, within TX73_003460at 736.654 kb on + strand, within TX73_003460at 736.682 kb on - strand, within TX73_003460at 736.700 kb on + strand, within TX73_003460at 736.720 kb on + strand, within TX73_003460at 736.728 kb on - strand, within TX73_003460at 736.728 kb on - strand, within TX73_003460at 736.770 kb on + strand, within TX73_003460at 736.821 kb on - strand, within TX73_003460at 736.930 kb on + strand, within TX73_003460at 736.939 kb on + strand, within TX73_003460at 736.941 kb on + strand, within TX73_003460at 736.947 kb on - strand, within TX73_003460at 736.947 kb on - strand, within TX73_003460at 737.032 kb on + strand, within TX73_003460at 737.047 kb on + strand, within TX73_003460at 737.047 kb on + strand, within TX73_003460at 737.082 kb on - strand, within TX73_003460at 737.181 kb on + strand, within TX73_003460at 737.271 kb on + strand, within TX73_003460at 737.292 kb on - strand, within TX73_003460at 737.335 kb on + strand, within TX73_003460at 737.369 kb on + strand, within TX73_003460at 737.402 kb on + strand, within TX73_003460at 737.402 kb on + strand, within TX73_003460at 737.446 kb on + strandat 737.487 kb on + strandat 737.510 kb on - strandat 737.538 kb on + strandat 737.553 kb on - strandat 737.685 kb on + strandat 737.695 kb on + strandat 737.719 kb on + strandat 737.755 kb on - strandat 737.755 kb on - strandat 737.760 kb on + strandat 737.844 kb on + strandat 737.874 kb on - strandat 737.904 kb on + strand, within TX73_003465at 737.904 kb on + strand, within TX73_003465at 737.925 kb on - strand, within TX73_003465at 737.933 kb on - strand, within TX73_003465at 738.029 kb on + strand, within TX73_003465at 738.041 kb on + strand, within TX73_003465at 738.069 kb on - strand, within TX73_003465at 738.104 kb on - strand, within TX73_003465at 738.331 kb on + strand, within TX73_003465at 738.341 kb on + strand, within TX73_003465at 738.394 kb on - strand, within TX73_003465at 738.399 kb on - strand, within TX73_003465at 738.507 kb on + strand, within TX73_003465at 738.515 kb on - strand, within TX73_003465

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with 4-Hydroxybenzoic Acid (C)
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735,376 + -0.5
735,407 - +1.2
735,408 + +0.2
735,457 + -0.5
735,507 - TX73_003455 0.10 -0.8
735,512 - TX73_003455 0.11 +1.3
735,637 - TX73_003455 0.25 +0.4
735,732 - TX73_003455 0.36 -1.2
735,869 + TX73_003455 0.52 +0.3
735,869 + TX73_003455 0.52 -0.4
736,016 + TX73_003455 0.69 +0.2
736,016 + TX73_003455 0.69 +0.6
736,024 - TX73_003455 0.70 +0.7
736,037 - TX73_003455 0.72 -0.3
736,202 + -0.8
736,204 - +0.4
736,210 - -1.7
736,246 - -0.7
736,247 - +0.5
736,248 - -1.6
736,267 + +0.0
736,267 + -1.1
736,275 - -0.1
736,275 - +0.8
736,303 + -0.5
736,306 - -1.1
736,340 + -0.9
736,369 - -0.5
736,435 - +0.4
736,545 - TX73_003460 0.15 +0.4
736,614 + TX73_003460 0.21 +0.5
736,614 + TX73_003460 0.21 -0.1
736,619 + TX73_003460 0.22 -0.2
736,630 - TX73_003460 0.22 +0.0
736,644 + TX73_003460 0.24 -0.3
736,654 + TX73_003460 0.25 -0.7
736,682 - TX73_003460 0.27 +0.1
736,700 + TX73_003460 0.28 -0.2
736,720 + TX73_003460 0.30 -1.0
736,728 - TX73_003460 0.31 +0.6
736,728 - TX73_003460 0.31 -0.2
736,770 + TX73_003460 0.34 -0.5
736,821 - TX73_003460 0.39 +0.1
736,930 + TX73_003460 0.48 -0.2
736,939 + TX73_003460 0.49 -0.3
736,941 + TX73_003460 0.49 -0.2
736,947 - TX73_003460 0.49 -0.7
736,947 - TX73_003460 0.49 +0.1
737,032 + TX73_003460 0.57 -0.8
737,047 + TX73_003460 0.58 -0.2
737,047 + TX73_003460 0.58 +0.1
737,082 - TX73_003460 0.61 +0.2
737,181 + TX73_003460 0.69 -0.7
737,271 + TX73_003460 0.77 +0.6
737,292 - TX73_003460 0.79 -0.4
737,335 + TX73_003460 0.82 -0.8
737,369 + TX73_003460 0.85 +0.9
737,402 + TX73_003460 0.88 +0.2
737,402 + TX73_003460 0.88 -0.1
737,446 + -0.1
737,487 + -2.6
737,510 - -1.6
737,538 + +1.9
737,553 - +0.1
737,685 + -1.2
737,695 + -0.1
737,719 + +0.0
737,755 - +0.5
737,755 - +1.9
737,760 + +1.1
737,844 + -0.0
737,874 - -0.7
737,904 + TX73_003465 0.11 +0.5
737,904 + TX73_003465 0.11 -0.4
737,925 - TX73_003465 0.13 -0.7
737,933 - TX73_003465 0.13 -1.7
738,029 + TX73_003465 0.19 +0.6
738,041 + TX73_003465 0.20 +0.5
738,069 - TX73_003465 0.22 +1.3
738,104 - TX73_003465 0.24 -0.9
738,331 + TX73_003465 0.38 -0.5
738,341 + TX73_003465 0.38 -0.3
738,394 - TX73_003465 0.42 -0.8
738,399 - TX73_003465 0.42 -0.4
738,507 + TX73_003465 0.49 +2.6
738,515 - TX73_003465 0.49 -0.4

Or see this region's nucleotide sequence