Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003450

Experiment: PM with 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003440 and TX73_003445 are separated by 98 nucleotidesTX73_003445 and TX73_003450 overlap by 4 nucleotidesTX73_003450 and TX73_003455 are separated by 2 nucleotidesTX73_003455 and TX73_003460 are separated by 85 nucleotides TX73_003440: TX73_003440 - GNAT family N-acetyltransferase, at 732,332 to 732,811 _003440 TX73_003445: TX73_003445 - ABC transporter ATP-binding protein, at 732,910 to 733,632 _003445 TX73_003450: TX73_003450 - branched-chain amino acid ABC transporter ATP-binding protein/permease, at 733,629 to 735,416 _003450 TX73_003455: TX73_003455 - branched-chain amino acid ABC transporter permease, at 735,419 to 736,279 _003455 TX73_003460: TX73_003460 - ABC transporter substrate-binding protein, at 736,365 to 737,543 _003460 Position (kb) 733 734 735 736Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 732.642 kb on + strand, within TX73_003440at 732.753 kb on + strand, within TX73_003440at 732.758 kb on + strand, within TX73_003440at 732.761 kb on - strand, within TX73_003440at 732.791 kb on + strandat 732.813 kb on + strandat 732.853 kb on + strandat 732.934 kb on - strandat 732.942 kb on + strandat 732.954 kb on + strandat 732.954 kb on + strandat 732.954 kb on + strandat 732.954 kb on + strandat 732.954 kb on + strandat 732.962 kb on - strandat 732.962 kb on - strandat 732.962 kb on - strandat 732.967 kb on - strandat 732.968 kb on + strandat 732.976 kb on - strandat 732.999 kb on - strand, within TX73_003445at 732.999 kb on - strand, within TX73_003445at 733.014 kb on - strand, within TX73_003445at 733.064 kb on + strand, within TX73_003445at 733.082 kb on - strand, within TX73_003445at 733.082 kb on - strand, within TX73_003445at 733.118 kb on - strand, within TX73_003445at 733.165 kb on + strand, within TX73_003445at 733.192 kb on + strand, within TX73_003445at 733.255 kb on + strand, within TX73_003445at 733.331 kb on - strand, within TX73_003445at 733.341 kb on + strand, within TX73_003445at 733.342 kb on - strand, within TX73_003445at 733.349 kb on - strand, within TX73_003445at 733.363 kb on - strand, within TX73_003445at 733.375 kb on + strand, within TX73_003445at 733.392 kb on + strand, within TX73_003445at 733.437 kb on + strand, within TX73_003445at 733.462 kb on - strand, within TX73_003445at 733.490 kb on + strand, within TX73_003445at 733.498 kb on - strand, within TX73_003445at 733.508 kb on + strand, within TX73_003445at 733.518 kb on + strand, within TX73_003445at 733.526 kb on + strand, within TX73_003445at 733.563 kb on + strandat 733.563 kb on + strandat 733.571 kb on - strandat 733.571 kb on - strandat 733.571 kb on - strandat 733.646 kb on - strandat 733.653 kb on - strandat 733.658 kb on + strandat 733.658 kb on + strandat 733.709 kb on + strandat 733.724 kb on - strandat 733.734 kb on + strandat 733.759 kb on + strandat 733.819 kb on + strand, within TX73_003450at 733.831 kb on + strand, within TX73_003450at 733.858 kb on - strand, within TX73_003450at 733.906 kb on + strand, within TX73_003450at 734.094 kb on + strand, within TX73_003450at 734.145 kb on + strand, within TX73_003450at 734.258 kb on - strand, within TX73_003450at 734.304 kb on - strand, within TX73_003450at 734.493 kb on - strand, within TX73_003450at 734.635 kb on + strand, within TX73_003450at 734.645 kb on + strand, within TX73_003450at 734.682 kb on + strand, within TX73_003450at 734.690 kb on + strand, within TX73_003450at 734.690 kb on + strand, within TX73_003450at 734.698 kb on - strand, within TX73_003450at 734.728 kb on + strand, within TX73_003450at 734.736 kb on - strand, within TX73_003450at 734.847 kb on + strand, within TX73_003450at 734.879 kb on + strand, within TX73_003450at 734.914 kb on + strand, within TX73_003450at 734.956 kb on - strand, within TX73_003450at 734.956 kb on - strand, within TX73_003450at 734.974 kb on + strand, within TX73_003450at 734.995 kb on + strand, within TX73_003450at 735.022 kb on + strand, within TX73_003450at 735.095 kb on - strand, within TX73_003450at 735.103 kb on + strand, within TX73_003450at 735.106 kb on + strand, within TX73_003450at 735.274 kb on + strandat 735.326 kb on + strandat 735.376 kb on + strandat 735.407 kb on - strandat 735.408 kb on + strandat 735.457 kb on + strandat 735.507 kb on - strand, within TX73_003455at 735.512 kb on - strand, within TX73_003455at 735.637 kb on - strand, within TX73_003455at 735.732 kb on - strand, within TX73_003455at 735.869 kb on + strand, within TX73_003455at 735.869 kb on + strand, within TX73_003455at 736.016 kb on + strand, within TX73_003455at 736.016 kb on + strand, within TX73_003455at 736.024 kb on - strand, within TX73_003455at 736.037 kb on - strand, within TX73_003455at 736.202 kb on + strandat 736.204 kb on - strandat 736.210 kb on - strandat 736.246 kb on - strandat 736.247 kb on - strandat 736.248 kb on - strandat 736.267 kb on + strandat 736.267 kb on + strandat 736.275 kb on - strandat 736.275 kb on - strandat 736.303 kb on + strandat 736.306 kb on - strandat 736.340 kb on + strandat 736.369 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with 4-Hydroxybenzoic Acid (C)
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732,642 + TX73_003440 0.65 -5.1
732,753 + TX73_003440 0.88 -3.7
732,758 + TX73_003440 0.89 -5.0
732,761 - TX73_003440 0.89 -1.8
732,791 + -5.0
732,813 + -3.5
732,853 + -2.5
732,934 - -1.0
732,942 + -0.8
732,954 + -0.3
732,954 + +1.7
732,954 + +0.1
732,954 + +0.9
732,954 + -0.6
732,962 - -2.1
732,962 - -0.3
732,962 - -0.6
732,967 - -0.1
732,968 + -0.4
732,976 - -0.5
732,999 - TX73_003445 0.12 +0.3
732,999 - TX73_003445 0.12 +0.1
733,014 - TX73_003445 0.14 +0.4
733,064 + TX73_003445 0.21 -0.7
733,082 - TX73_003445 0.24 -0.2
733,082 - TX73_003445 0.24 -0.7
733,118 - TX73_003445 0.29 -0.2
733,165 + TX73_003445 0.35 -1.1
733,192 + TX73_003445 0.39 +0.4
733,255 + TX73_003445 0.48 +0.3
733,331 - TX73_003445 0.58 -0.3
733,341 + TX73_003445 0.60 -0.9
733,342 - TX73_003445 0.60 +1.1
733,349 - TX73_003445 0.61 -0.9
733,363 - TX73_003445 0.63 -1.4
733,375 + TX73_003445 0.64 -2.4
733,392 + TX73_003445 0.67 -1.1
733,437 + TX73_003445 0.73 -0.9
733,462 - TX73_003445 0.76 -0.0
733,490 + TX73_003445 0.80 +0.3
733,498 - TX73_003445 0.81 -0.2
733,508 + TX73_003445 0.83 +0.5
733,518 + TX73_003445 0.84 -0.2
733,526 + TX73_003445 0.85 -1.7
733,563 + -1.5
733,563 + -0.6
733,571 - -1.5
733,571 - -0.6
733,571 - -0.3
733,646 - +0.1
733,653 - -0.2
733,658 + +1.0
733,658 + -0.8
733,709 + +1.0
733,724 - -0.1
733,734 + +0.8
733,759 + -0.4
733,819 + TX73_003450 0.11 +0.7
733,831 + TX73_003450 0.11 -0.6
733,858 - TX73_003450 0.13 +1.1
733,906 + TX73_003450 0.15 -0.3
734,094 + TX73_003450 0.26 +1.4
734,145 + TX73_003450 0.29 -0.0
734,258 - TX73_003450 0.35 -0.9
734,304 - TX73_003450 0.38 -0.3
734,493 - TX73_003450 0.48 -1.3
734,635 + TX73_003450 0.56 +0.7
734,645 + TX73_003450 0.57 +0.4
734,682 + TX73_003450 0.59 -0.6
734,690 + TX73_003450 0.59 -0.2
734,690 + TX73_003450 0.59 +0.0
734,698 - TX73_003450 0.60 -0.3
734,728 + TX73_003450 0.61 -0.3
734,736 - TX73_003450 0.62 -0.9
734,847 + TX73_003450 0.68 +0.5
734,879 + TX73_003450 0.70 +0.6
734,914 + TX73_003450 0.72 +0.6
734,956 - TX73_003450 0.74 +0.0
734,956 - TX73_003450 0.74 -0.4
734,974 + TX73_003450 0.75 +0.1
734,995 + TX73_003450 0.76 -0.9
735,022 + TX73_003450 0.78 -0.8
735,095 - TX73_003450 0.82 +0.0
735,103 + TX73_003450 0.82 -0.8
735,106 + TX73_003450 0.83 -1.0
735,274 + +0.3
735,326 + -0.7
735,376 + -0.5
735,407 - +1.2
735,408 + +0.2
735,457 + -0.5
735,507 - TX73_003455 0.10 -0.8
735,512 - TX73_003455 0.11 +1.3
735,637 - TX73_003455 0.25 +0.4
735,732 - TX73_003455 0.36 -1.2
735,869 + TX73_003455 0.52 +0.3
735,869 + TX73_003455 0.52 -0.4
736,016 + TX73_003455 0.69 +0.2
736,016 + TX73_003455 0.69 +0.6
736,024 - TX73_003455 0.70 +0.7
736,037 - TX73_003455 0.72 -0.3
736,202 + -0.8
736,204 - +0.4
736,210 - -1.7
736,246 - -0.7
736,247 - +0.5
736,248 - -1.6
736,267 + +0.0
736,267 + -1.1
736,275 - -0.1
736,275 - +0.8
736,303 + -0.5
736,306 - -1.1
736,340 + -0.9
736,369 - -0.5

Or see this region's nucleotide sequence