Experiment: PM with 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002610 and TX73_002615 are separated by 10 nucleotides TX73_002615 and TX73_002620 are separated by 138 nucleotides TX73_002620 and TX73_002625 are separated by 16 nucleotides
TX73_002610: TX73_002610 - 3-dehydroquinate synthase, at 557,974 to 559,119
_002610
TX73_002615: TX73_002615 - shikimate kinase, at 559,130 to 559,732
_002615
TX73_002620: TX73_002620 - histidine kinase, at 559,871 to 560,017
_002620
TX73_002625: TX73_002625 - site-specific tyrosine recombinase XerD, at 560,034 to 561,050
_002625
Position (kb) 559
560 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 559.082 kb on + strand at 559.097 kb on + strand at 559.097 kb on + strand at 559.107 kb on - strand at 559.120 kb on - strand at 559.128 kb on + strand at 559.151 kb on + strand at 559.683 kb on + strand at 559.684 kb on - strand at 559.747 kb on - strand at 559.750 kb on - strand at 559.750 kb on - strand at 559.756 kb on + strand at 559.761 kb on + strand at 559.763 kb on + strand at 559.764 kb on - strand at 559.765 kb on + strand at 559.765 kb on + strand at 559.765 kb on + strand at 559.765 kb on + strand at 559.765 kb on + strand at 559.765 kb on + strand at 559.765 kb on + strand at 559.765 kb on + strand at 559.765 kb on + strand at 559.765 kb on + strand at 559.765 kb on + strand at 559.765 kb on + strand at 559.765 kb on + strand at 559.765 kb on + strand at 559.765 kb on + strand at 559.765 kb on + strand at 559.769 kb on - strand at 559.770 kb on + strand at 559.771 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.773 kb on - strand at 559.802 kb on + strand at 559.814 kb on - strand at 559.814 kb on - strand at 559.841 kb on + strand at 559.848 kb on - strand at 559.865 kb on - strand at 559.872 kb on + strand at 559.880 kb on - strand at 559.880 kb on - strand at 559.898 kb on - strand, within TX73_002620 at 560.011 kb on + strand at 560.018 kb on + strand at 560.026 kb on - strand at 560.031 kb on - strand at 560.054 kb on + strand at 560.054 kb on + strand at 560.054 kb on + strand at 560.054 kb on + strand at 560.054 kb on + strand at 560.054 kb on + strand at 560.054 kb on + strand at 560.062 kb on - strand at 560.062 kb on - strand at 560.062 kb on - strand at 560.062 kb on - strand at 560.062 kb on - strand at 560.062 kb on - strand at 560.062 kb on - strand at 560.062 kb on - strand at 560.062 kb on - strand at 560.072 kb on + strand at 560.078 kb on + strand at 560.078 kb on + strand at 560.078 kb on + strand at 560.085 kb on + strand at 560.136 kb on - strand, within TX73_002625 at 560.185 kb on - strand, within TX73_002625 at 560.213 kb on - strand, within TX73_002625 at 560.227 kb on - strand, within TX73_002625 at 560.256 kb on - strand, within TX73_002625 at 560.258 kb on + strand, within TX73_002625 at 560.262 kb on - strand, within TX73_002625 at 560.292 kb on + strand, within TX73_002625 at 560.302 kb on + strand, within TX73_002625 at 560.313 kb on + strand, within TX73_002625 at 560.318 kb on + strand, within TX73_002625 at 560.336 kb on + strand, within TX73_002625 at 560.336 kb on - strand, within TX73_002625 at 560.381 kb on + strand, within TX73_002625 at 560.394 kb on - strand, within TX73_002625 at 560.409 kb on - strand, within TX73_002625 at 560.411 kb on + strand, within TX73_002625 at 560.424 kb on - strand, within TX73_002625 at 560.424 kb on - strand, within TX73_002625 at 560.428 kb on + strand, within TX73_002625 at 560.436 kb on - strand, within TX73_002625 at 560.472 kb on + strand, within TX73_002625 at 560.477 kb on + strand, within TX73_002625 at 560.482 kb on - strand, within TX73_002625 at 560.482 kb on - strand, within TX73_002625 at 560.523 kb on - strand, within TX73_002625 at 560.535 kb on + strand, within TX73_002625 at 560.537 kb on + strand, within TX73_002625 at 560.543 kb on - strand, within TX73_002625 at 560.566 kb on + strand, within TX73_002625 at 560.581 kb on + strand, within TX73_002625 at 560.581 kb on + strand, within TX73_002625 at 560.581 kb on + strand, within TX73_002625 at 560.581 kb on + strand, within TX73_002625 at 560.581 kb on + strand, within TX73_002625 at 560.594 kb on - strand, within TX73_002625 at 560.594 kb on - strand, within TX73_002625 at 560.599 kb on - strand, within TX73_002625 at 560.614 kb on - strand, within TX73_002625 at 560.630 kb on + strand, within TX73_002625 at 560.632 kb on + strand, within TX73_002625 at 560.632 kb on + strand, within TX73_002625 at 560.634 kb on + strand, within TX73_002625 at 560.651 kb on + strand, within TX73_002625 at 560.660 kb on + strand, within TX73_002625 at 560.670 kb on + strand, within TX73_002625 at 560.704 kb on - strand, within TX73_002625 at 560.710 kb on + strand, within TX73_002625
Per-strain Table
Position Strand Gene LocusTag Fraction PM with 4-Hydroxybenzoic Acid (C) remove 559,082 + +0.0 559,097 + -0.8 559,097 + -0.6 559,107 - +1.9 559,120 - +1.0 559,128 + +0.1 559,151 + -1.9 559,683 + +0.5 559,684 - +0.4 559,747 - +0.7 559,750 - -0.0 559,750 - +0.2 559,756 + +0.2 559,761 + +0.7 559,763 + +0.0 559,764 - +0.9 559,765 + +2.2 559,765 + +0.2 559,765 + -0.9 559,765 + +0.2 559,765 + +1.7 559,765 + +1.0 559,765 + -0.4 559,765 + -0.5 559,765 + -1.1 559,765 + -0.5 559,765 + -0.1 559,765 + -0.1 559,765 + +0.4 559,765 + -3.2 559,765 + -0.0 559,765 + -0.8 559,769 - +0.8 559,770 + +0.3 559,771 - -1.6 559,773 - -0.1 559,773 - +0.0 559,773 - -0.1 559,773 - -0.4 559,773 - +0.0 559,773 - +1.0 559,773 - +0.0 559,773 - +0.5 559,773 - -0.5 559,773 - -2.2 559,773 - -0.2 559,773 - -0.1 559,773 - +0.8 559,773 - -1.5 559,773 - -0.6 559,773 - -0.1 559,773 - +1.1 559,773 - +0.5 559,802 + +0.5 559,814 - +0.7 559,814 - +0.6 559,841 + -0.6 559,848 - +0.9 559,865 - +1.2 559,872 + +0.6 559,880 - -1.1 559,880 - +0.4 559,898 - TX73_002620 0.18 -0.4 560,011 + -0.1 560,018 + +0.5 560,026 - -0.1 560,031 - +0.1 560,054 + +2.2 560,054 + -0.1 560,054 + +0.1 560,054 + -0.6 560,054 + -0.5 560,054 + +0.1 560,054 + -0.3 560,062 - -0.6 560,062 - +0.2 560,062 - +1.0 560,062 - -0.5 560,062 - -0.3 560,062 - -0.4 560,062 - +0.6 560,062 - +0.8 560,062 - -0.6 560,072 + -1.0 560,078 + -0.1 560,078 + -0.5 560,078 + -0.5 560,085 + +0.1 560,136 - TX73_002625 0.10 -2.1 560,185 - TX73_002625 0.15 +1.4 560,213 - TX73_002625 0.18 -0.2 560,227 - TX73_002625 0.19 -0.9 560,256 - TX73_002625 0.22 +1.9 560,258 + TX73_002625 0.22 +1.5 560,262 - TX73_002625 0.22 +0.9 560,292 + TX73_002625 0.25 -0.4 560,302 + TX73_002625 0.26 +1.1 560,313 + TX73_002625 0.27 -0.3 560,318 + TX73_002625 0.28 -2.2 560,336 + TX73_002625 0.30 +0.1 560,336 - TX73_002625 0.30 +2.9 560,381 + TX73_002625 0.34 +0.5 560,394 - TX73_002625 0.35 +1.3 560,409 - TX73_002625 0.37 +0.8 560,411 + TX73_002625 0.37 -1.4 560,424 - TX73_002625 0.38 +1.4 560,424 - TX73_002625 0.38 -0.1 560,428 + TX73_002625 0.39 +0.1 560,436 - TX73_002625 0.40 +1.7 560,472 + TX73_002625 0.43 +0.9 560,477 + TX73_002625 0.44 +0.1 560,482 - TX73_002625 0.44 +1.9 560,482 - TX73_002625 0.44 +1.7 560,523 - TX73_002625 0.48 -0.8 560,535 + TX73_002625 0.49 -1.4 560,537 + TX73_002625 0.49 -0.6 560,543 - TX73_002625 0.50 -1.2 560,566 + TX73_002625 0.52 -0.1 560,581 + TX73_002625 0.54 +0.4 560,581 + TX73_002625 0.54 +0.4 560,581 + TX73_002625 0.54 +0.4 560,581 + TX73_002625 0.54 +0.4 560,581 + TX73_002625 0.54 +2.5 560,594 - TX73_002625 0.55 +0.0 560,594 - TX73_002625 0.55 +0.3 560,599 - TX73_002625 0.56 -0.4 560,614 - TX73_002625 0.57 -1.4 560,630 + TX73_002625 0.59 +1.3 560,632 + TX73_002625 0.59 +2.9 560,632 + TX73_002625 0.59 +0.2 560,634 + TX73_002625 0.59 -1.9 560,651 + TX73_002625 0.61 -0.1 560,660 + TX73_002625 0.62 -0.1 560,670 + TX73_002625 0.63 +0.0 560,704 - TX73_002625 0.66 -0.9 560,710 + TX73_002625 0.66 +1.2
Or see this region's nucleotide sequence