Experiment: PM with 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002140 and TX73_002145 are separated by 189 nucleotides TX73_002145 and TX73_002150 are separated by 106 nucleotides TX73_002150 and TX73_002155 are separated by 25 nucleotides TX73_002155 and TX73_002160 are separated by 199 nucleotides
TX73_002140: TX73_002140 - M20 family peptidase, at 454,844 to 456,331
_002140
TX73_002145: TX73_002145 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 456,521 to 457,408
_002145
TX73_002150: TX73_002150 - DUF167 domain-containing protein, at 457,515 to 457,841
_002150
TX73_002155: TX73_002155 - YggT family protein, at 457,867 to 458,157
_002155
TX73_002160: TX73_002160 - tRNA-Ala, at 458,357 to 458,432
_002160
Position (kb) 456
457
458 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 455.522 kb on - strand, within TX73_002140 at 455.550 kb on - strand, within TX73_002140 at 455.554 kb on + strand, within TX73_002140 at 455.575 kb on - strand, within TX73_002140 at 455.575 kb on - strand, within TX73_002140 at 455.590 kb on + strand, within TX73_002140 at 455.590 kb on + strand, within TX73_002140 at 455.595 kb on + strand, within TX73_002140 at 455.605 kb on + strand, within TX73_002140 at 455.605 kb on + strand, within TX73_002140 at 455.605 kb on + strand, within TX73_002140 at 455.605 kb on + strand, within TX73_002140 at 455.605 kb on + strand, within TX73_002140 at 455.613 kb on - strand, within TX73_002140 at 455.624 kb on + strand, within TX73_002140 at 455.625 kb on + strand, within TX73_002140 at 455.625 kb on + strand, within TX73_002140 at 455.625 kb on + strand, within TX73_002140 at 455.633 kb on - strand, within TX73_002140 at 455.635 kb on + strand, within TX73_002140 at 455.681 kb on + strand, within TX73_002140 at 455.681 kb on + strand, within TX73_002140 at 455.689 kb on - strand, within TX73_002140 at 455.698 kb on - strand, within TX73_002140 at 455.700 kb on - strand, within TX73_002140 at 455.718 kb on - strand, within TX73_002140 at 455.767 kb on - strand, within TX73_002140 at 455.767 kb on - strand, within TX73_002140 at 455.772 kb on + strand, within TX73_002140 at 455.791 kb on + strand, within TX73_002140 at 455.791 kb on + strand, within TX73_002140 at 455.791 kb on + strand, within TX73_002140 at 455.791 kb on + strand, within TX73_002140 at 455.798 kb on + strand, within TX73_002140 at 455.799 kb on - strand, within TX73_002140 at 455.799 kb on - strand, within TX73_002140 at 455.804 kb on - strand, within TX73_002140 at 455.806 kb on + strand, within TX73_002140 at 455.806 kb on + strand, within TX73_002140 at 455.814 kb on - strand, within TX73_002140 at 455.839 kb on + strand, within TX73_002140 at 455.860 kb on + strand, within TX73_002140 at 455.869 kb on - strand, within TX73_002140 at 455.876 kb on + strand, within TX73_002140 at 455.877 kb on + strand, within TX73_002140 at 455.890 kb on - strand, within TX73_002140 at 455.895 kb on - strand, within TX73_002140 at 455.895 kb on - strand, within TX73_002140 at 455.895 kb on - strand, within TX73_002140 at 455.900 kb on + strand, within TX73_002140 at 455.908 kb on - strand, within TX73_002140 at 455.908 kb on - strand, within TX73_002140 at 455.912 kb on + strand, within TX73_002140 at 455.912 kb on + strand, within TX73_002140 at 455.927 kb on + strand, within TX73_002140 at 455.935 kb on - strand, within TX73_002140 at 455.966 kb on + strand, within TX73_002140 at 455.966 kb on + strand, within TX73_002140 at 455.974 kb on - strand, within TX73_002140 at 455.974 kb on - strand, within TX73_002140 at 455.974 kb on - strand, within TX73_002140 at 455.989 kb on + strand, within TX73_002140 at 456.066 kb on - strand, within TX73_002140 at 456.081 kb on + strand, within TX73_002140 at 456.086 kb on - strand, within TX73_002140 at 456.087 kb on - strand, within TX73_002140 at 456.102 kb on - strand, within TX73_002140 at 456.102 kb on - strand, within TX73_002140 at 456.105 kb on + strand, within TX73_002140 at 456.115 kb on + strand, within TX73_002140 at 456.122 kb on - strand, within TX73_002140 at 456.123 kb on - strand, within TX73_002140 at 456.143 kb on - strand, within TX73_002140 at 456.143 kb on - strand, within TX73_002140 at 456.143 kb on - strand, within TX73_002140 at 456.143 kb on - strand, within TX73_002140 at 456.153 kb on - strand, within TX73_002140 at 456.153 kb on - strand, within TX73_002140 at 456.162 kb on + strand, within TX73_002140 at 456.162 kb on + strand, within TX73_002140 at 456.162 kb on + strand, within TX73_002140 at 456.162 kb on + strand, within TX73_002140 at 456.170 kb on - strand, within TX73_002140 at 456.170 kb on - strand, within TX73_002140 at 456.193 kb on - strand at 456.210 kb on - strand at 456.224 kb on + strand at 456.225 kb on - strand at 456.230 kb on - strand at 456.232 kb on + strand at 456.232 kb on + strand at 456.232 kb on - strand at 456.257 kb on - strand at 456.270 kb on - strand at 456.284 kb on + strand at 456.284 kb on + strand at 456.295 kb on + strand at 456.316 kb on + strand at 456.316 kb on + strand at 456.316 kb on + strand at 456.333 kb on + strand at 456.341 kb on + strand at 456.349 kb on - strand at 456.351 kb on + strand at 456.358 kb on + strand at 456.358 kb on + strand at 456.364 kb on - strand at 456.460 kb on + strand at 456.468 kb on - strand at 456.468 kb on - strand at 456.468 kb on - strand at 456.479 kb on - strand at 456.495 kb on + strand at 456.503 kb on - strand at 456.518 kb on + strand at 456.526 kb on - strand at 456.526 kb on - strand at 456.534 kb on - strand at 456.539 kb on - strand at 456.539 kb on - strand at 456.550 kb on - strand at 456.550 kb on - strand at 457.389 kb on + strand at 457.409 kb on + strand at 457.415 kb on + strand at 457.416 kb on + strand at 457.420 kb on - strand at 457.423 kb on - strand at 457.424 kb on - strand at 457.425 kb on + strand at 457.431 kb on + strand at 457.433 kb on - strand at 457.433 kb on - strand at 457.433 kb on - strand at 457.453 kb on + strand at 457.476 kb on - strand at 457.489 kb on - strand at 457.533 kb on - strand at 457.535 kb on + strand at 457.535 kb on + strand at 457.543 kb on - strand at 457.543 kb on - strand at 457.543 kb on - strand at 457.545 kb on + strand at 457.545 kb on + strand at 457.550 kb on + strand, within TX73_002150 at 457.555 kb on + strand, within TX73_002150 at 457.565 kb on + strand, within TX73_002150 at 457.565 kb on + strand, within TX73_002150 at 457.565 kb on + strand, within TX73_002150 at 457.565 kb on + strand, within TX73_002150 at 457.571 kb on - strand, within TX73_002150 at 457.573 kb on - strand, within TX73_002150 at 457.573 kb on - strand, within TX73_002150 at 457.573 kb on - strand, within TX73_002150 at 457.621 kb on + strand, within TX73_002150 at 457.624 kb on - strand, within TX73_002150 at 457.635 kb on - strand, within TX73_002150 at 457.651 kb on + strand, within TX73_002150 at 457.659 kb on - strand, within TX73_002150 at 457.659 kb on - strand, within TX73_002150 at 457.664 kb on + strand, within TX73_002150 at 457.710 kb on + strand, within TX73_002150 at 457.718 kb on - strand, within TX73_002150 at 457.735 kb on + strand, within TX73_002150 at 457.735 kb on + strand, within TX73_002150 at 457.735 kb on + strand, within TX73_002150 at 457.743 kb on - strand, within TX73_002150 at 457.743 kb on - strand, within TX73_002150 at 457.743 kb on - strand, within TX73_002150 at 457.748 kb on + strand, within TX73_002150 at 457.756 kb on - strand, within TX73_002150 at 457.762 kb on - strand, within TX73_002150 at 457.766 kb on - strand, within TX73_002150 at 457.784 kb on + strand, within TX73_002150 at 457.784 kb on + strand, within TX73_002150 at 457.784 kb on + strand, within TX73_002150 at 457.802 kb on + strand, within TX73_002150 at 457.802 kb on + strand, within TX73_002150 at 457.802 kb on + strand, within TX73_002150 at 457.809 kb on + strand at 457.810 kb on - strand at 457.810 kb on - strand at 457.810 kb on - strand at 457.810 kb on - strand at 457.814 kb on + strand at 457.822 kb on - strand at 457.822 kb on - strand at 457.824 kb on - strand at 457.830 kb on + strand at 457.839 kb on - strand at 457.866 kb on + strand at 457.866 kb on + strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.888 kb on - strand at 457.895 kb on + strand at 457.895 kb on + strand at 457.914 kb on - strand, within TX73_002155 at 457.916 kb on - strand, within TX73_002155 at 457.921 kb on - strand, within TX73_002155 at 457.926 kb on - strand, within TX73_002155 at 457.927 kb on + strand, within TX73_002155 at 457.935 kb on - strand, within TX73_002155 at 457.935 kb on - strand, within TX73_002155 at 457.947 kb on + strand, within TX73_002155 at 457.948 kb on + strand, within TX73_002155 at 457.974 kb on - strand, within TX73_002155 at 457.974 kb on - strand, within TX73_002155 at 458.018 kb on + strand, within TX73_002155 at 458.028 kb on - strand, within TX73_002155 at 458.028 kb on - strand, within TX73_002155 at 458.028 kb on - strand, within TX73_002155 at 458.051 kb on - strand, within TX73_002155 at 458.061 kb on + strand, within TX73_002155 at 458.080 kb on + strand, within TX73_002155 at 458.084 kb on - strand, within TX73_002155 at 458.088 kb on - strand, within TX73_002155 at 458.088 kb on - strand, within TX73_002155 at 458.110 kb on + strand, within TX73_002155 at 458.110 kb on + strand, within TX73_002155 at 458.110 kb on + strand, within TX73_002155 at 458.118 kb on + strand, within TX73_002155 at 458.136 kb on - strand at 458.148 kb on - strand at 458.200 kb on - strand at 458.206 kb on + strand at 458.217 kb on - strand at 458.219 kb on - strand at 458.219 kb on - strand at 458.219 kb on - strand at 458.220 kb on + strand at 458.228 kb on - strand at 458.254 kb on - strand at 458.265 kb on + strand at 458.273 kb on - strand at 458.273 kb on - strand at 458.275 kb on + strand at 458.277 kb on + strand at 458.283 kb on - strand at 458.284 kb on + strand at 458.284 kb on + strand at 458.284 kb on + strand at 458.292 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PM with 4-Hydroxybenzoic Acid (C) remove 455,522 - TX73_002140 0.46 -0.4 455,550 - TX73_002140 0.47 +0.3 455,554 + TX73_002140 0.48 -1.2 455,575 - TX73_002140 0.49 -0.3 455,575 - TX73_002140 0.49 +0.5 455,590 + TX73_002140 0.50 -0.1 455,590 + TX73_002140 0.50 +0.5 455,595 + TX73_002140 0.50 -0.7 455,605 + TX73_002140 0.51 +1.6 455,605 + TX73_002140 0.51 -1.1 455,605 + TX73_002140 0.51 -0.2 455,605 + TX73_002140 0.51 -0.1 455,605 + TX73_002140 0.51 +0.5 455,613 - TX73_002140 0.52 +1.0 455,624 + TX73_002140 0.52 +1.3 455,625 + TX73_002140 0.52 +0.5 455,625 + TX73_002140 0.52 -0.2 455,625 + TX73_002140 0.52 +0.6 455,633 - TX73_002140 0.53 +1.0 455,635 + TX73_002140 0.53 +0.8 455,681 + TX73_002140 0.56 +0.4 455,681 + TX73_002140 0.56 +0.4 455,689 - TX73_002140 0.57 +0.5 455,698 - TX73_002140 0.57 -1.6 455,700 - TX73_002140 0.58 +0.7 455,718 - TX73_002140 0.59 +0.1 455,767 - TX73_002140 0.62 +2.0 455,767 - TX73_002140 0.62 +1.0 455,772 + TX73_002140 0.62 +0.1 455,791 + TX73_002140 0.64 -0.5 455,791 + TX73_002140 0.64 -1.0 455,791 + TX73_002140 0.64 +0.0 455,791 + TX73_002140 0.64 -0.5 455,798 + TX73_002140 0.64 +1.6 455,799 - TX73_002140 0.64 -0.3 455,799 - TX73_002140 0.64 -0.5 455,804 - TX73_002140 0.65 +1.7 455,806 + TX73_002140 0.65 -0.0 455,806 + TX73_002140 0.65 +1.3 455,814 - TX73_002140 0.65 +0.1 455,839 + TX73_002140 0.67 +1.1 455,860 + TX73_002140 0.68 +0.4 455,869 - TX73_002140 0.69 -0.0 455,876 + TX73_002140 0.69 +0.5 455,877 + TX73_002140 0.69 +1.6 455,890 - TX73_002140 0.70 -0.1 455,895 - TX73_002140 0.71 -0.6 455,895 - TX73_002140 0.71 +0.4 455,895 - TX73_002140 0.71 +0.8 455,900 + TX73_002140 0.71 +0.3 455,908 - TX73_002140 0.72 +1.6 455,908 - TX73_002140 0.72 -1.7 455,912 + TX73_002140 0.72 -0.5 455,912 + TX73_002140 0.72 +1.1 455,927 + TX73_002140 0.73 +1.5 455,935 - TX73_002140 0.73 +1.4 455,966 + TX73_002140 0.75 -0.2 455,966 + TX73_002140 0.75 +0.5 455,974 - TX73_002140 0.76 +0.0 455,974 - TX73_002140 0.76 -0.0 455,974 - TX73_002140 0.76 +0.5 455,989 + TX73_002140 0.77 +0.4 456,066 - TX73_002140 0.82 -0.9 456,081 + TX73_002140 0.83 +0.0 456,086 - TX73_002140 0.83 -0.0 456,087 - TX73_002140 0.84 +0.3 456,102 - TX73_002140 0.85 -0.7 456,102 - TX73_002140 0.85 +0.7 456,105 + TX73_002140 0.85 -0.2 456,115 + TX73_002140 0.85 -0.3 456,122 - TX73_002140 0.86 +0.7 456,123 - TX73_002140 0.86 +0.0 456,143 - TX73_002140 0.87 +0.2 456,143 - TX73_002140 0.87 +0.1 456,143 - TX73_002140 0.87 +0.5 456,143 - TX73_002140 0.87 -1.8 456,153 - TX73_002140 0.88 -0.2 456,153 - TX73_002140 0.88 -0.2 456,162 + TX73_002140 0.89 -0.6 456,162 + TX73_002140 0.89 -0.7 456,162 + TX73_002140 0.89 -0.6 456,162 + TX73_002140 0.89 +0.7 456,170 - TX73_002140 0.89 +0.3 456,170 - TX73_002140 0.89 +0.7 456,193 - +0.3 456,210 - -0.7 456,224 + +0.4 456,225 - +0.1 456,230 - -0.6 456,232 + +0.4 456,232 + -0.3 456,232 - +0.9 456,257 - -0.0 456,270 - +0.5 456,284 + -0.5 456,284 + -0.7 456,295 + +0.4 456,316 + +0.1 456,316 + -0.2 456,316 + +0.1 456,333 + -0.2 456,341 + -0.4 456,349 - -0.5 456,351 + -0.3 456,358 + +0.7 456,358 + -0.0 456,364 - -0.5 456,460 + -0.2 456,468 - -0.4 456,468 - -0.5 456,468 - +0.3 456,479 - +0.1 456,495 + +0.1 456,503 - -0.2 456,518 + -0.3 456,526 - +0.0 456,526 - -0.3 456,534 - -1.6 456,539 - +0.8 456,539 - +0.3 456,550 - +0.3 456,550 - -0.8 457,389 + +0.2 457,409 + +0.1 457,415 + -1.1 457,416 + -0.1 457,420 - -0.5 457,423 - +0.1 457,424 - +0.7 457,425 + +0.0 457,431 + +0.2 457,433 - -0.5 457,433 - +1.3 457,433 - -0.3 457,453 + -0.0 457,476 - +0.8 457,489 - -1.0 457,533 - +0.1 457,535 + -0.5 457,535 + +1.0 457,543 - +0.9 457,543 - +0.4 457,543 - -0.1 457,545 + +0.3 457,545 + -0.9 457,550 + TX73_002150 0.11 -0.0 457,555 + TX73_002150 0.12 -0.3 457,565 + TX73_002150 0.15 -0.3 457,565 + TX73_002150 0.15 +1.0 457,565 + TX73_002150 0.15 -0.5 457,565 + TX73_002150 0.15 -1.6 457,571 - TX73_002150 0.17 -1.2 457,573 - TX73_002150 0.18 -0.7 457,573 - TX73_002150 0.18 -0.9 457,573 - TX73_002150 0.18 -0.8 457,621 + TX73_002150 0.32 -0.5 457,624 - TX73_002150 0.33 -0.3 457,635 - TX73_002150 0.37 +0.2 457,651 + TX73_002150 0.42 +0.8 457,659 - TX73_002150 0.44 +0.9 457,659 - TX73_002150 0.44 +0.7 457,664 + TX73_002150 0.46 +0.1 457,710 + TX73_002150 0.60 -0.3 457,718 - TX73_002150 0.62 +0.2 457,735 + TX73_002150 0.67 -0.1 457,735 + TX73_002150 0.67 +0.9 457,735 + TX73_002150 0.67 -0.7 457,743 - TX73_002150 0.70 +1.1 457,743 - TX73_002150 0.70 +0.3 457,743 - TX73_002150 0.70 -0.5 457,748 + TX73_002150 0.71 +0.1 457,756 - TX73_002150 0.74 -0.4 457,762 - TX73_002150 0.76 +0.3 457,766 - TX73_002150 0.77 +0.2 457,784 + TX73_002150 0.82 +0.2 457,784 + TX73_002150 0.82 -0.2 457,784 + TX73_002150 0.82 +0.1 457,802 + TX73_002150 0.88 -1.0 457,802 + TX73_002150 0.88 -0.1 457,802 + TX73_002150 0.88 -0.0 457,809 + -0.5 457,810 - -0.6 457,810 - +0.1 457,810 - -0.6 457,810 - +0.6 457,814 + +0.3 457,822 - -0.4 457,822 - -1.9 457,824 - -1.1 457,830 + +0.4 457,839 - -0.0 457,866 + -0.5 457,866 + -0.0 457,873 - -0.5 457,873 - -0.1 457,873 - +0.5 457,873 - +0.5 457,873 - +1.3 457,873 - -0.5 457,888 - +0.3 457,895 + +0.7 457,895 + -1.7 457,914 - TX73_002155 0.16 +0.3 457,916 - TX73_002155 0.17 -2.8 457,921 - TX73_002155 0.19 -1.1 457,926 - TX73_002155 0.20 +0.3 457,927 + TX73_002155 0.21 -1.1 457,935 - TX73_002155 0.23 -1.8 457,935 - TX73_002155 0.23 +1.8 457,947 + TX73_002155 0.27 -1.7 457,948 + TX73_002155 0.28 -2.6 457,974 - TX73_002155 0.37 -0.4 457,974 - TX73_002155 0.37 -1.9 458,018 + TX73_002155 0.52 -0.5 458,028 - TX73_002155 0.55 -1.6 458,028 - TX73_002155 0.55 +1.0 458,028 - TX73_002155 0.55 -3.4 458,051 - TX73_002155 0.63 -0.0 458,061 + TX73_002155 0.67 -1.6 458,080 + TX73_002155 0.73 -1.4 458,084 - TX73_002155 0.75 -3.0 458,088 - TX73_002155 0.76 -1.2 458,088 - TX73_002155 0.76 +0.8 458,110 + TX73_002155 0.84 -1.0 458,110 + TX73_002155 0.84 -1.1 458,110 + TX73_002155 0.84 -1.9 458,118 + TX73_002155 0.86 -1.0 458,136 - -0.5 458,148 - -0.6 458,200 - +0.1 458,206 + +0.3 458,217 - -0.6 458,219 - +0.6 458,219 - +0.0 458,219 - -0.3 458,220 + +1.0 458,228 - -0.8 458,254 - +1.6 458,265 + -0.3 458,273 - +0.0 458,273 - -1.6 458,275 + -0.5 458,277 + -0.5 458,283 - +0.8 458,284 + -0.6 458,284 + -2.0 458,284 + +0.3 458,292 - +0.5
Or see this region's nucleotide sequence