Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_015690

Experiment: PM with 4-Hydroxybenzoic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with 4-Hydroxybenzoic Acid (C)
3,430,512	-				-0.3
3,430,514	+				+0.6
3,430,540	+				-0.3
3,430,540	+				+0.3
3,430,540	+				-0.3
3,430,548	-				+0.0
3,430,548	-				-0.3
3,430,548	-				-0.3
3,430,548	-				+0.7
3,430,548	-				+0.7
3,430,569	-				-0.2
3,430,571	+				+0.4
3,430,579	-				-0.9
3,430,591	+				+0.1
3,430,612	+				+1.2
3,430,640	+				+0.2
3,430,647	-				-0.0
3,430,658	+				-0.6
3,430,668	+				-1.6
3,430,668	+				-0.6
3,430,670	-				+0.5
3,430,671	-				-0.3
3,430,676	-				+0.6
3,430,676	-				+0.2
3,430,677	-				-0.2
3,430,677	-				-0.6
3,430,710	+				-0.4
3,430,730	+				-2.6
3,430,738	-				+0.4
3,430,784	-		TX73_015680	0.25	+0.9
3,430,853	-		TX73_015680	0.65	-0.6
3,430,878	+		TX73_015680	0.79	+0.9
3,430,901	+				+0.5
3,430,914	+				+0.5
3,430,929	-				+0.1
3,430,939	+				-0.7
3,430,939	+				-0.9
3,430,939	+				+0.1
3,430,944	+				-0.7
3,430,947	-				-0.0
3,430,947	-				-0.4
3,430,949	+				-3.5
3,430,949	+				+1.2
3,430,949	+				-0.4
3,430,952	-				+0.8
3,430,957	-				-1.5
3,430,957	-				-2.2
3,430,957	-				-0.5
3,431,004	-				-0.2
3,431,055	-				+0.4
3,431,060	+				+0.9
3,431,068	-				+1.7
3,431,069	+				-0.3
3,431,069	+				-0.5
3,431,075	+				-0.3
3,431,077	-				+3.0
3,431,078	-				+1.3
3,431,083	-				+1.7
3,431,100	-				+3.6
3,431,147	+		TX73_015685	0.20	+1.7
3,431,147	+		TX73_015685	0.20	+2.6
3,431,147	+		TX73_015685	0.20	+2.8
3,431,147	+		TX73_015685	0.20	+2.9
3,431,155	-		TX73_015685	0.22	+3.0
3,431,220	+		TX73_015685	0.44	+3.9
3,431,221	+		TX73_015685	0.44	+3.4
3,431,248	-		TX73_015685	0.54	+3.1
3,431,277	-		TX73_015685	0.63	+3.0
3,431,277	-		TX73_015685	0.63	+1.9
3,431,277	-		TX73_015685	0.63	+1.9
3,431,280	+		TX73_015685	0.64	+2.5
3,431,296	-		TX73_015685	0.70	+2.7
3,431,314	-		TX73_015685	0.76	+3.8
3,431,322	-		TX73_015685	0.78	+2.8
3,431,324	+		TX73_015685	0.79	+2.4
3,431,324	+		TX73_015685	0.79	+2.4
3,431,324	+		TX73_015685	0.79	+2.0
3,431,329	+		TX73_015685	0.81	+2.0
3,431,332	-		TX73_015685	0.82	+2.9
3,431,332	-		TX73_015685	0.82	+3.4
3,431,350	-		TX73_015685	0.88	+1.4
3,431,370	+				+1.1
3,431,379	+				-0.5
3,431,387	-				-1.1
3,431,387	-				+0.1
3,431,389	+				+1.1
3,431,399	+				+0.2
3,431,399	+				+0.9
3,431,428	-				+2.2
3,431,429	-				-0.3
3,431,434	-				-0.2
3,431,458	+				-0.3
3,431,463	+				+0.9
3,431,465	+				+0.6
3,431,466	-				+1.2
3,431,466	-				-0.2
3,431,475	+				-0.8
3,431,485	+				-0.3
3,431,501	+				-0.9
3,431,501	+				-0.1
3,431,501	-				+0.4
3,431,509	-				-0.9
3,431,509	-				-0.8
3,431,509	-				-0.7
3,431,509	-				-0.6
3,431,516	+				-2.1
3,431,542	+				-2.6
3,431,550	-				-0.5
3,431,567	+		TX73_015690	0.10	-0.8
3,431,570	-		TX73_015690	0.11	-1.3
3,431,596	+		TX73_015690	0.15	-0.2
3,431,623	+		TX73_015690	0.19	-2.4
3,431,628	+		TX73_015690	0.20	-0.1
3,431,631	-		TX73_015690	0.20	+1.3
3,431,675	+		TX73_015690	0.27	-0.5
3,431,675	+		TX73_015690	0.27	-1.9
3,431,675	+		TX73_015690	0.27	-1.0
3,431,681	-		TX73_015690	0.28	-0.5
3,431,683	-		TX73_015690	0.29	+0.2
3,431,713	+		TX73_015690	0.33	-1.4
3,431,715	+		TX73_015690	0.34	-0.5
3,431,715	+		TX73_015690	0.34	+0.2
3,431,741	-		TX73_015690	0.38	-1.0
3,431,749	+		TX73_015690	0.39	-0.7
3,431,757	-		TX73_015690	0.41	-1.5
3,431,785	+		TX73_015690	0.45	-3.3
3,431,785	-		TX73_015690	0.45	-0.6
3,431,816	+		TX73_015690	0.50	-1.3
3,431,874	+		TX73_015690	0.59	-1.0
3,431,877	-		TX73_015690	0.60	-0.9
3,431,894	+		TX73_015690	0.62	-1.3
3,431,904	+		TX73_015690	0.64	-1.3
3,431,912	-		TX73_015690	0.65	-1.0
3,431,994	-		TX73_015690	0.79	-3.4
3,432,063	+		TX73_015690	0.90	-0.5
3,432,066	-				-1.6
3,432,088	+				-0.7
3,432,096	-				-1.7
3,432,096	-				-0.9
3,432,111	-				-0.3
3,432,130	-				-1.3
3,432,139	+				-0.4
3,432,140	-				+0.8
3,432,154	-				+1.1
3,432,156	+				-1.4
3,432,160	-				-0.0
3,432,160	-				+0.7
3,432,160	-				-1.5
3,432,172	+				-0.0
3,432,172	+				-1.0
3,432,172	+				-0.5
3,432,175	-				-0.6
3,432,180	-				+0.7
3,432,304	+				+0.5
3,432,304	+				-1.3
3,432,304	+				+0.8
3,432,304	+				-0.2
3,432,312	-				-1.0
3,432,312	-				-0.4
3,432,337	+				+0.3
3,432,345	-				+0.2
3,432,368	-				+0.0
3,432,369	+				-1.7
3,432,377	-				+0.2
3,432,382	+				-0.3
3,432,400	-				+0.4
3,432,446	-		TX73_015695	0.16	-2.4
3,432,450	+		TX73_015695	0.17	-0.5
3,432,457	-		TX73_015695	0.19	+0.3
3,432,457	-		TX73_015695	0.19	+1.4
3,432,483	+		TX73_015695	0.25	-0.4
3,432,544	+		TX73_015695	0.41	-1.7
3,432,557	-		TX73_015695	0.44	+1.3
3,432,562	-		TX73_015695	0.45	-0.2
3,432,583	+		TX73_015695	0.50	-0.2
3,432,584	+		TX73_015695	0.51	+1.3
3,432,600	+		TX73_015695	0.55	-0.4
3,432,608	+		TX73_015695	0.57	+0.1
3,432,608	+		TX73_015695	0.57	-1.3
3,432,619	+		TX73_015695	0.59	-0.1
3,432,656	+		TX73_015695	0.69	+0.2
3,432,656	+		TX73_015695	0.69	+0.1
3,432,656	+		TX73_015695	0.69	-0.4
3,432,656	-		TX73_015695	0.69	+0.7
3,432,658	+		TX73_015695	0.69	-0.5
3,432,664	-		TX73_015695	0.71	-0.4
3,432,709	-		TX73_015695	0.82	-0.1
3,432,718	+		TX73_015695	0.84	+0.4
3,432,750	+				+0.2
3,432,768	+				+1.3
3,432,796	-				+0.2
3,432,826	+				+0.4
3,432,848	-				-0.1
3,432,850	+				+0.0
3,432,890	-				+0.4
3,432,892	+				+1.1
3,432,901	-				-0.3
3,432,919	+				-0.6
3,432,925	+				+1.3
3,432,925	+				+0.0
3,432,932	-				+1.7
3,432,936	+				-0.3
3,432,941	+				+0.6
3,432,944	-				+0.3
3,432,956	+				-0.0
3,432,961	+				-2.6
3,432,964	-				-0.5
3,432,964	-				-0.0
3,432,964	-				+1.5
3,432,964	-				-0.2
3,432,964	-				+0.1
3,432,997	+				-0.1
3,433,014	-				+0.4
3,433,015	-				+0.7
3,433,046	+				+1.0
3,433,066	+		TX73_015700	0.11	-0.4
3,433,079	+		TX73_015700	0.12	+1.2
3,433,079	+		TX73_015700	0.12	+0.0
3,433,099	-		TX73_015700	0.13	+0.9
3,433,111	+		TX73_015700	0.14	+2.3