Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002425

Experiment: PM with p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002415 and TX73_002420 are separated by 2 nucleotidesTX73_002420 and TX73_002425 overlap by 1 nucleotidesTX73_002425 and TX73_002430 overlap by 4 nucleotidesTX73_002430 and TX73_002435 are separated by 8 nucleotides TX73_002415: TX73_002415 - AprI/Inh family metalloprotease inhibitor, at 514,701 to 515,384 _002415 TX73_002420: TX73_002420 - 2-hydroxyacid dehydrogenase, at 515,387 to 516,373 _002420 TX73_002425: TX73_002425 - ABC transporter permease, at 516,373 to 517,197 _002425 TX73_002430: TX73_002430 - ABC transporter ATP-binding protein, at 517,194 to 518,024 _002430 TX73_002435: TX73_002435 - ABC transporter substrate-binding protein, at 518,033 to 519,175 _002435 Position (kb) 516 517 518Strain fitness (log2 ratio) -2 -1 0 1 2at 515.414 kb on - strandat 515.477 kb on - strandat 515.524 kb on + strand, within TX73_002420at 515.537 kb on - strand, within TX73_002420at 515.624 kb on + strand, within TX73_002420at 515.691 kb on - strand, within TX73_002420at 515.749 kb on + strand, within TX73_002420at 515.756 kb on + strand, within TX73_002420at 515.765 kb on - strand, within TX73_002420at 515.774 kb on - strand, within TX73_002420at 515.785 kb on + strand, within TX73_002420at 515.785 kb on + strand, within TX73_002420at 515.793 kb on - strand, within TX73_002420at 515.828 kb on - strand, within TX73_002420at 515.831 kb on + strand, within TX73_002420at 515.893 kb on - strand, within TX73_002420at 515.953 kb on + strand, within TX73_002420at 515.965 kb on + strand, within TX73_002420at 516.091 kb on + strand, within TX73_002420at 516.094 kb on - strand, within TX73_002420at 516.096 kb on + strand, within TX73_002420at 516.101 kb on + strand, within TX73_002420at 516.104 kb on - strand, within TX73_002420at 516.116 kb on + strand, within TX73_002420at 516.124 kb on - strand, within TX73_002420at 516.152 kb on - strand, within TX73_002420at 516.172 kb on - strand, within TX73_002420at 516.180 kb on - strand, within TX73_002420at 516.180 kb on - strand, within TX73_002420at 516.185 kb on - strand, within TX73_002420at 516.187 kb on + strand, within TX73_002420at 516.190 kb on - strand, within TX73_002420at 516.194 kb on + strand, within TX73_002420at 516.195 kb on - strand, within TX73_002420at 516.200 kb on + strand, within TX73_002420at 516.210 kb on - strand, within TX73_002420at 516.262 kb on + strand, within TX73_002420at 516.267 kb on + strand, within TX73_002420at 516.267 kb on + strand, within TX73_002420at 516.277 kb on + strandat 516.291 kb on + strandat 516.322 kb on + strandat 516.322 kb on + strandat 516.322 kb on + strandat 516.346 kb on + strandat 516.535 kb on + strand, within TX73_002425at 516.535 kb on + strand, within TX73_002425at 516.548 kb on - strand, within TX73_002425at 516.632 kb on + strand, within TX73_002425at 516.632 kb on + strand, within TX73_002425at 516.632 kb on + strand, within TX73_002425at 516.638 kb on - strand, within TX73_002425at 516.640 kb on - strand, within TX73_002425at 516.654 kb on + strand, within TX73_002425at 516.654 kb on + strand, within TX73_002425at 516.667 kb on - strand, within TX73_002425at 516.689 kb on + strand, within TX73_002425at 516.695 kb on + strand, within TX73_002425at 516.695 kb on + strand, within TX73_002425at 516.703 kb on - strand, within TX73_002425at 516.705 kb on + strand, within TX73_002425at 516.725 kb on + strand, within TX73_002425at 516.730 kb on + strand, within TX73_002425at 516.733 kb on - strand, within TX73_002425at 516.746 kb on + strand, within TX73_002425at 516.746 kb on + strand, within TX73_002425at 516.754 kb on - strand, within TX73_002425at 516.754 kb on - strand, within TX73_002425at 516.759 kb on - strand, within TX73_002425at 516.798 kb on - strand, within TX73_002425at 516.812 kb on + strand, within TX73_002425at 516.855 kb on + strand, within TX73_002425at 516.965 kb on - strand, within TX73_002425at 516.968 kb on + strand, within TX73_002425at 516.976 kb on - strand, within TX73_002425at 516.976 kb on - strand, within TX73_002425at 516.979 kb on + strand, within TX73_002425at 516.994 kb on + strand, within TX73_002425at 516.999 kb on + strand, within TX73_002425at 517.002 kb on - strand, within TX73_002425at 517.004 kb on + strand, within TX73_002425at 517.007 kb on - strand, within TX73_002425at 517.009 kb on + strand, within TX73_002425at 517.009 kb on + strand, within TX73_002425at 517.012 kb on - strand, within TX73_002425at 517.012 kb on - strand, within TX73_002425at 517.012 kb on - strand, within TX73_002425at 517.017 kb on - strand, within TX73_002425at 517.073 kb on + strand, within TX73_002425at 517.086 kb on + strand, within TX73_002425at 517.086 kb on + strand, within TX73_002425at 517.133 kb on + strandat 517.141 kb on - strandat 517.156 kb on + strandat 517.183 kb on + strandat 517.185 kb on + strandat 517.190 kb on - strandat 517.210 kb on + strandat 517.218 kb on - strandat 517.238 kb on + strandat 517.282 kb on + strand, within TX73_002430at 517.319 kb on + strand, within TX73_002430at 517.384 kb on + strand, within TX73_002430at 517.403 kb on + strand, within TX73_002430at 517.403 kb on + strand, within TX73_002430at 517.429 kb on - strand, within TX73_002430at 517.548 kb on + strand, within TX73_002430at 517.556 kb on - strand, within TX73_002430at 517.573 kb on + strand, within TX73_002430at 517.573 kb on + strand, within TX73_002430at 517.616 kb on + strand, within TX73_002430at 517.621 kb on + strand, within TX73_002430at 517.634 kb on - strand, within TX73_002430at 517.634 kb on - strand, within TX73_002430at 517.680 kb on - strand, within TX73_002430at 517.825 kb on - strand, within TX73_002430at 517.839 kb on - strand, within TX73_002430at 517.839 kb on - strand, within TX73_002430at 517.893 kb on - strand, within TX73_002430at 517.972 kb on - strandat 518.014 kb on + strandat 518.047 kb on + strandat 518.061 kb on - strandat 518.061 kb on - strandat 518.081 kb on + strandat 518.087 kb on + strandat 518.150 kb on + strand, within TX73_002435

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with p-Coumaric (C)
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515,414 - +0.4
515,477 - +0.0
515,524 + TX73_002420 0.14 +1.2
515,537 - TX73_002420 0.15 +0.9
515,624 + TX73_002420 0.24 -0.3
515,691 - TX73_002420 0.31 +0.4
515,749 + TX73_002420 0.37 +0.1
515,756 + TX73_002420 0.37 +0.1
515,765 - TX73_002420 0.38 -0.4
515,774 - TX73_002420 0.39 +0.3
515,785 + TX73_002420 0.40 -0.4
515,785 + TX73_002420 0.40 -0.3
515,793 - TX73_002420 0.41 +0.7
515,828 - TX73_002420 0.45 +1.1
515,831 + TX73_002420 0.45 -0.7
515,893 - TX73_002420 0.51 -0.4
515,953 + TX73_002420 0.57 -1.3
515,965 + TX73_002420 0.59 -0.1
516,091 + TX73_002420 0.71 -0.1
516,094 - TX73_002420 0.72 -0.1
516,096 + TX73_002420 0.72 -0.2
516,101 + TX73_002420 0.72 +0.6
516,104 - TX73_002420 0.73 +0.8
516,116 + TX73_002420 0.74 -0.4
516,124 - TX73_002420 0.75 +0.4
516,152 - TX73_002420 0.78 -0.0
516,172 - TX73_002420 0.80 +0.1
516,180 - TX73_002420 0.80 -0.1
516,180 - TX73_002420 0.80 +0.3
516,185 - TX73_002420 0.81 +0.2
516,187 + TX73_002420 0.81 +0.3
516,190 - TX73_002420 0.81 -1.3
516,194 + TX73_002420 0.82 +0.6
516,195 - TX73_002420 0.82 -2.6
516,200 + TX73_002420 0.82 +1.2
516,210 - TX73_002420 0.83 +0.1
516,262 + TX73_002420 0.89 +0.4
516,267 + TX73_002420 0.89 -1.0
516,267 + TX73_002420 0.89 -0.4
516,277 + -0.5
516,291 + -0.1
516,322 + +0.3
516,322 + -0.1
516,322 + +0.5
516,346 + -1.0
516,535 + TX73_002425 0.20 +0.9
516,535 + TX73_002425 0.20 +0.1
516,548 - TX73_002425 0.21 +0.7
516,632 + TX73_002425 0.31 +0.3
516,632 + TX73_002425 0.31 +0.2
516,632 + TX73_002425 0.31 +1.2
516,638 - TX73_002425 0.32 +0.7
516,640 - TX73_002425 0.32 +0.9
516,654 + TX73_002425 0.34 -0.0
516,654 + TX73_002425 0.34 +0.6
516,667 - TX73_002425 0.36 +0.3
516,689 + TX73_002425 0.38 +0.0
516,695 + TX73_002425 0.39 +0.4
516,695 + TX73_002425 0.39 -0.5
516,703 - TX73_002425 0.40 +0.7
516,705 + TX73_002425 0.40 -0.1
516,725 + TX73_002425 0.43 +0.3
516,730 + TX73_002425 0.43 -0.2
516,733 - TX73_002425 0.44 +0.7
516,746 + TX73_002425 0.45 +0.4
516,746 + TX73_002425 0.45 +0.5
516,754 - TX73_002425 0.46 -1.7
516,754 - TX73_002425 0.46 -0.7
516,759 - TX73_002425 0.47 +0.5
516,798 - TX73_002425 0.52 +0.3
516,812 + TX73_002425 0.53 +1.4
516,855 + TX73_002425 0.58 -0.8
516,965 - TX73_002425 0.72 +0.3
516,968 + TX73_002425 0.72 +0.2
516,976 - TX73_002425 0.73 +0.1
516,976 - TX73_002425 0.73 +0.6
516,979 + TX73_002425 0.73 +0.5
516,994 + TX73_002425 0.75 +0.0
516,999 + TX73_002425 0.76 +0.8
517,002 - TX73_002425 0.76 +0.7
517,004 + TX73_002425 0.76 +1.2
517,007 - TX73_002425 0.77 -1.7
517,009 + TX73_002425 0.77 -0.5
517,009 + TX73_002425 0.77 -0.5
517,012 - TX73_002425 0.77 -1.1
517,012 - TX73_002425 0.77 -2.1
517,012 - TX73_002425 0.77 +0.2
517,017 - TX73_002425 0.78 +0.6
517,073 + TX73_002425 0.85 +0.9
517,086 + TX73_002425 0.86 +0.4
517,086 + TX73_002425 0.86 +0.7
517,133 + -0.4
517,141 - +0.9
517,156 + -0.1
517,183 + -0.0
517,185 + +2.0
517,190 - +0.3
517,210 + +0.4
517,218 - +0.3
517,238 + -0.0
517,282 + TX73_002430 0.11 -1.3
517,319 + TX73_002430 0.15 +0.4
517,384 + TX73_002430 0.23 +0.3
517,403 + TX73_002430 0.25 -0.0
517,403 + TX73_002430 0.25 +0.5
517,429 - TX73_002430 0.28 +0.1
517,548 + TX73_002430 0.43 -1.1
517,556 - TX73_002430 0.44 +0.4
517,573 + TX73_002430 0.46 +0.2
517,573 + TX73_002430 0.46 +0.8
517,616 + TX73_002430 0.51 -0.4
517,621 + TX73_002430 0.51 -0.2
517,634 - TX73_002430 0.53 -0.7
517,634 - TX73_002430 0.53 +0.6
517,680 - TX73_002430 0.58 -0.0
517,825 - TX73_002430 0.76 -0.5
517,839 - TX73_002430 0.78 -0.2
517,839 - TX73_002430 0.78 +0.2
517,893 - TX73_002430 0.84 +0.2
517,972 - +1.1
518,014 + -0.9
518,047 + +0.1
518,061 - +1.9
518,061 - +0.8
518,081 + -0.1
518,087 + +0.5
518,150 + TX73_002435 0.10 -0.8

Or see this region's nucleotide sequence