Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_004445

Experiment: PM with benzoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_004440 and TX73_004445 overlap by 4 nucleotidesTX73_004445 and TX73_004450 are separated by 34 nucleotidesTX73_004450 and TX73_004455 are separated by 60 nucleotides TX73_004440: TX73_004440 - GTP-binding protein, at 957,753 to 958,802 _004440 TX73_004445: TX73_004445 - WD40 repeat domain-containing protein, at 958,799 to 959,818 _004445 TX73_004450: TX73_004450 - MgtC/SapB family protein, at 959,853 to 960,575 _004450 TX73_004455: TX73_004455 - hypothetical protein, at 960,636 to 961,034 _004455 Position (kb) 958 959 960Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 957.825 kb on - strandat 957.833 kb on - strandat 957.835 kb on - strandat 957.835 kb on - strandat 957.893 kb on + strand, within TX73_004440at 957.904 kb on + strand, within TX73_004440at 957.912 kb on - strand, within TX73_004440at 957.962 kb on + strand, within TX73_004440at 957.970 kb on - strand, within TX73_004440at 957.972 kb on + strand, within TX73_004440at 957.972 kb on + strand, within TX73_004440at 957.972 kb on - strand, within TX73_004440at 957.975 kb on - strand, within TX73_004440at 958.013 kb on + strand, within TX73_004440at 958.077 kb on + strand, within TX73_004440at 958.085 kb on - strand, within TX73_004440at 958.106 kb on + strand, within TX73_004440at 958.112 kb on - strand, within TX73_004440at 958.112 kb on - strand, within TX73_004440at 958.131 kb on + strand, within TX73_004440at 958.139 kb on - strand, within TX73_004440at 958.139 kb on - strand, within TX73_004440at 958.158 kb on - strand, within TX73_004440at 958.169 kb on + strand, within TX73_004440at 958.177 kb on - strand, within TX73_004440at 958.177 kb on - strand, within TX73_004440at 958.274 kb on - strand, within TX73_004440at 958.295 kb on - strand, within TX73_004440at 958.307 kb on + strand, within TX73_004440at 958.315 kb on - strand, within TX73_004440at 958.330 kb on - strand, within TX73_004440at 958.332 kb on - strand, within TX73_004440at 958.344 kb on + strand, within TX73_004440at 958.344 kb on + strand, within TX73_004440at 958.400 kb on + strand, within TX73_004440at 958.408 kb on + strand, within TX73_004440at 958.431 kb on + strand, within TX73_004440at 958.439 kb on - strand, within TX73_004440at 958.483 kb on + strand, within TX73_004440at 958.531 kb on + strand, within TX73_004440at 958.531 kb on - strand, within TX73_004440at 958.556 kb on + strand, within TX73_004440at 958.581 kb on + strand, within TX73_004440at 958.588 kb on - strand, within TX73_004440at 958.594 kb on - strand, within TX73_004440at 958.610 kb on + strand, within TX73_004440at 958.610 kb on + strand, within TX73_004440at 958.618 kb on - strand, within TX73_004440at 958.618 kb on - strand, within TX73_004440at 958.618 kb on - strand, within TX73_004440at 958.653 kb on + strand, within TX73_004440at 958.655 kb on + strand, within TX73_004440at 958.655 kb on + strand, within TX73_004440at 958.655 kb on + strand, within TX73_004440at 958.684 kb on + strand, within TX73_004440at 958.691 kb on - strand, within TX73_004440at 958.692 kb on - strand, within TX73_004440at 958.692 kb on - strand, within TX73_004440at 958.734 kb on + strandat 958.742 kb on - strandat 958.742 kb on - strandat 958.742 kb on - strandat 958.752 kb on - strandat 958.814 kb on - strandat 958.852 kb on - strandat 958.854 kb on + strandat 958.879 kb on - strandat 958.882 kb on + strandat 958.890 kb on - strandat 958.916 kb on + strand, within TX73_004445at 958.924 kb on - strand, within TX73_004445at 958.926 kb on - strand, within TX73_004445at 958.929 kb on - strand, within TX73_004445at 958.938 kb on + strand, within TX73_004445at 958.967 kb on + strand, within TX73_004445at 958.984 kb on - strand, within TX73_004445at 958.999 kb on + strand, within TX73_004445at 959.023 kb on - strand, within TX73_004445at 959.038 kb on - strand, within TX73_004445at 959.054 kb on + strand, within TX73_004445at 959.056 kb on - strand, within TX73_004445at 959.060 kb on + strand, within TX73_004445at 959.060 kb on - strand, within TX73_004445at 959.062 kb on + strand, within TX73_004445at 959.065 kb on + strand, within TX73_004445at 959.070 kb on + strand, within TX73_004445at 959.070 kb on + strand, within TX73_004445at 959.074 kb on + strand, within TX73_004445at 959.080 kb on + strand, within TX73_004445at 959.081 kb on + strand, within TX73_004445at 959.081 kb on + strand, within TX73_004445at 959.088 kb on - strand, within TX73_004445at 959.089 kb on - strand, within TX73_004445at 959.135 kb on + strand, within TX73_004445at 959.145 kb on + strand, within TX73_004445at 959.182 kb on - strand, within TX73_004445at 959.201 kb on + strand, within TX73_004445at 959.208 kb on - strand, within TX73_004445at 959.218 kb on + strand, within TX73_004445at 959.218 kb on + strand, within TX73_004445at 959.218 kb on + strand, within TX73_004445at 959.226 kb on - strand, within TX73_004445at 959.226 kb on - strand, within TX73_004445at 959.227 kb on - strand, within TX73_004445at 959.249 kb on - strand, within TX73_004445at 959.255 kb on + strand, within TX73_004445at 959.276 kb on + strand, within TX73_004445at 959.278 kb on + strand, within TX73_004445at 959.284 kb on - strand, within TX73_004445at 959.286 kb on + strand, within TX73_004445at 959.291 kb on + strand, within TX73_004445at 959.291 kb on + strand, within TX73_004445at 959.291 kb on + strand, within TX73_004445at 959.362 kb on + strand, within TX73_004445at 959.367 kb on + strand, within TX73_004445at 959.406 kb on - strand, within TX73_004445at 959.419 kb on - strand, within TX73_004445at 959.477 kb on - strand, within TX73_004445at 959.478 kb on - strand, within TX73_004445at 959.482 kb on + strand, within TX73_004445at 959.484 kb on - strand, within TX73_004445at 959.504 kb on + strand, within TX73_004445at 959.509 kb on + strand, within TX73_004445at 959.517 kb on - strand, within TX73_004445at 959.519 kb on + strand, within TX73_004445at 959.531 kb on + strand, within TX73_004445at 959.562 kb on + strand, within TX73_004445at 959.564 kb on + strand, within TX73_004445at 959.605 kb on - strand, within TX73_004445at 959.605 kb on - strand, within TX73_004445at 959.616 kb on - strand, within TX73_004445at 959.626 kb on - strand, within TX73_004445at 959.653 kb on + strand, within TX73_004445at 959.670 kb on - strand, within TX73_004445at 959.673 kb on + strand, within TX73_004445at 959.680 kb on - strand, within TX73_004445at 959.686 kb on + strand, within TX73_004445at 959.697 kb on + strand, within TX73_004445at 959.716 kb on + strand, within TX73_004445at 959.724 kb on - strandat 959.741 kb on + strandat 959.744 kb on - strandat 959.746 kb on + strandat 959.746 kb on + strandat 959.761 kb on + strandat 959.768 kb on + strandat 959.776 kb on - strandat 959.776 kb on - strandat 959.788 kb on + strandat 959.796 kb on - strandat 959.813 kb on - strandat 959.823 kb on + strandat 959.900 kb on + strandat 959.925 kb on - strandat 959.936 kb on + strand, within TX73_004450at 959.936 kb on + strand, within TX73_004450at 959.944 kb on - strand, within TX73_004450at 959.960 kb on + strand, within TX73_004450at 959.981 kb on - strand, within TX73_004450at 959.986 kb on - strand, within TX73_004450at 959.988 kb on - strand, within TX73_004450at 959.988 kb on - strand, within TX73_004450at 959.990 kb on + strand, within TX73_004450at 959.991 kb on - strand, within TX73_004450at 960.033 kb on + strand, within TX73_004450at 960.033 kb on + strand, within TX73_004450at 960.056 kb on + strand, within TX73_004450at 960.057 kb on + strand, within TX73_004450at 960.070 kb on + strand, within TX73_004450at 960.078 kb on + strand, within TX73_004450at 960.078 kb on - strand, within TX73_004450at 960.084 kb on + strand, within TX73_004450at 960.086 kb on - strand, within TX73_004450at 960.124 kb on + strand, within TX73_004450at 960.132 kb on - strand, within TX73_004450at 960.161 kb on + strand, within TX73_004450at 960.161 kb on + strand, within TX73_004450at 960.216 kb on - strand, within TX73_004450at 960.228 kb on + strand, within TX73_004450at 960.230 kb on + strand, within TX73_004450at 960.238 kb on - strand, within TX73_004450at 960.262 kb on - strand, within TX73_004450at 960.266 kb on + strand, within TX73_004450at 960.266 kb on + strand, within TX73_004450at 960.304 kb on + strand, within TX73_004450at 960.312 kb on - strand, within TX73_004450at 960.312 kb on - strand, within TX73_004450at 960.329 kb on + strand, within TX73_004450at 960.352 kb on + strand, within TX73_004450at 960.382 kb on + strand, within TX73_004450at 960.390 kb on - strand, within TX73_004450at 960.390 kb on - strand, within TX73_004450at 960.390 kb on - strand, within TX73_004450at 960.398 kb on + strand, within TX73_004450at 960.413 kb on + strand, within TX73_004450at 960.435 kb on - strand, within TX73_004450at 960.435 kb on - strand, within TX73_004450at 960.448 kb on + strand, within TX73_004450at 960.457 kb on - strand, within TX73_004450at 960.463 kb on + strand, within TX73_004450at 960.473 kb on - strand, within TX73_004450at 960.474 kb on - strand, within TX73_004450at 960.474 kb on - strand, within TX73_004450at 960.474 kb on - strand, within TX73_004450at 960.474 kb on - strand, within TX73_004450at 960.478 kb on - strand, within TX73_004450at 960.478 kb on - strand, within TX73_004450at 960.491 kb on + strand, within TX73_004450at 960.511 kb on + strandat 960.530 kb on + strandat 960.540 kb on + strandat 960.651 kb on + strandat 960.670 kb on + strandat 960.678 kb on - strand, within TX73_004455at 960.679 kb on - strand, within TX73_004455at 960.707 kb on + strand, within TX73_004455at 960.741 kb on + strand, within TX73_004455at 960.799 kb on + strand, within TX73_004455

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with benzoic (C)
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957,825 - -1.5
957,833 - -2.5
957,835 - -3.6
957,835 - +0.4
957,893 + TX73_004440 0.13 -1.5
957,904 + TX73_004440 0.14 -1.7
957,912 - TX73_004440 0.15 -0.7
957,962 + TX73_004440 0.20 -1.2
957,970 - TX73_004440 0.21 -2.6
957,972 + TX73_004440 0.21 -3.8
957,972 + TX73_004440 0.21 -2.3
957,972 - TX73_004440 0.21 -1.9
957,975 - TX73_004440 0.21 -1.4
958,013 + TX73_004440 0.25 -1.6
958,077 + TX73_004440 0.31 -3.3
958,085 - TX73_004440 0.32 -0.7
958,106 + TX73_004440 0.34 -1.6
958,112 - TX73_004440 0.34 -4.2
958,112 - TX73_004440 0.34 -2.6
958,131 + TX73_004440 0.36 -1.7
958,139 - TX73_004440 0.37 -3.1
958,139 - TX73_004440 0.37 -2.5
958,158 - TX73_004440 0.39 -1.7
958,169 + TX73_004440 0.40 -2.7
958,177 - TX73_004440 0.40 -3.9
958,177 - TX73_004440 0.40 -3.9
958,274 - TX73_004440 0.50 -2.7
958,295 - TX73_004440 0.52 -0.5
958,307 + TX73_004440 0.53 -3.5
958,315 - TX73_004440 0.54 -5.4
958,330 - TX73_004440 0.55 -1.1
958,332 - TX73_004440 0.55 -2.7
958,344 + TX73_004440 0.56 -0.9
958,344 + TX73_004440 0.56 -2.2
958,400 + TX73_004440 0.62 -3.8
958,408 + TX73_004440 0.62 -1.6
958,431 + TX73_004440 0.65 -3.7
958,439 - TX73_004440 0.65 -1.2
958,483 + TX73_004440 0.70 -2.7
958,531 + TX73_004440 0.74 -2.6
958,531 - TX73_004440 0.74 -1.3
958,556 + TX73_004440 0.76 -2.7
958,581 + TX73_004440 0.79 -1.6
958,588 - TX73_004440 0.80 -1.6
958,594 - TX73_004440 0.80 -1.5
958,610 + TX73_004440 0.82 -0.3
958,610 + TX73_004440 0.82 -2.0
958,618 - TX73_004440 0.82 -1.6
958,618 - TX73_004440 0.82 -2.1
958,618 - TX73_004440 0.82 -2.3
958,653 + TX73_004440 0.86 -2.8
958,655 + TX73_004440 0.86 -0.3
958,655 + TX73_004440 0.86 -0.9
958,655 + TX73_004440 0.86 -3.8
958,684 + TX73_004440 0.89 -3.1
958,691 - TX73_004440 0.89 -1.6
958,692 - TX73_004440 0.89 -1.2
958,692 - TX73_004440 0.89 -1.6
958,734 + -3.1
958,742 - -2.8
958,742 - -0.9
958,742 - -3.0
958,752 - -1.3
958,814 - -1.7
958,852 - -3.1
958,854 + -0.2
958,879 - -4.4
958,882 + -1.6
958,890 - -0.4
958,916 + TX73_004445 0.11 -1.1
958,924 - TX73_004445 0.12 -1.4
958,926 - TX73_004445 0.12 -2.7
958,929 - TX73_004445 0.13 -4.0
958,938 + TX73_004445 0.14 -1.6
958,967 + TX73_004445 0.16 -1.4
958,984 - TX73_004445 0.18 -2.5
958,999 + TX73_004445 0.20 +1.1
959,023 - TX73_004445 0.22 -1.3
959,038 - TX73_004445 0.23 -1.7
959,054 + TX73_004445 0.25 -1.6
959,056 - TX73_004445 0.25 -2.9
959,060 + TX73_004445 0.26 -1.7
959,060 - TX73_004445 0.26 -2.0
959,062 + TX73_004445 0.26 -1.7
959,065 + TX73_004445 0.26 -1.5
959,070 + TX73_004445 0.27 -2.3
959,070 + TX73_004445 0.27 -2.7
959,074 + TX73_004445 0.27 -3.2
959,080 + TX73_004445 0.28 -2.7
959,081 + TX73_004445 0.28 -2.2
959,081 + TX73_004445 0.28 -2.2
959,088 - TX73_004445 0.28 -0.9
959,089 - TX73_004445 0.28 -1.5
959,135 + TX73_004445 0.33 -1.4
959,145 + TX73_004445 0.34 -3.4
959,182 - TX73_004445 0.38 -1.7
959,201 + TX73_004445 0.39 -1.2
959,208 - TX73_004445 0.40 -2.5
959,218 + TX73_004445 0.41 -1.6
959,218 + TX73_004445 0.41 -2.1
959,218 + TX73_004445 0.41 -2.3
959,226 - TX73_004445 0.42 -2.4
959,226 - TX73_004445 0.42 -3.7
959,227 - TX73_004445 0.42 -2.6
959,249 - TX73_004445 0.44 -2.7
959,255 + TX73_004445 0.45 -1.6
959,276 + TX73_004445 0.47 -1.7
959,278 + TX73_004445 0.47 -3.8
959,284 - TX73_004445 0.48 -2.1
959,286 + TX73_004445 0.48 -1.7
959,291 + TX73_004445 0.48 -3.1
959,291 + TX73_004445 0.48 -2.2
959,291 + TX73_004445 0.48 -1.5
959,362 + TX73_004445 0.55 -1.2
959,367 + TX73_004445 0.56 -2.4
959,406 - TX73_004445 0.60 -1.6
959,419 - TX73_004445 0.61 -1.4
959,477 - TX73_004445 0.66 -2.5
959,478 - TX73_004445 0.67 -2.4
959,482 + TX73_004445 0.67 -3.8
959,484 - TX73_004445 0.67 -2.6
959,504 + TX73_004445 0.69 -3.9
959,509 + TX73_004445 0.70 -4.1
959,517 - TX73_004445 0.70 -1.4
959,519 + TX73_004445 0.71 -2.1
959,531 + TX73_004445 0.72 -2.7
959,562 + TX73_004445 0.75 -1.9
959,564 + TX73_004445 0.75 -2.4
959,605 - TX73_004445 0.79 -0.8
959,605 - TX73_004445 0.79 -1.9
959,616 - TX73_004445 0.80 -1.6
959,626 - TX73_004445 0.81 -3.9
959,653 + TX73_004445 0.84 -1.6
959,670 - TX73_004445 0.85 -3.1
959,673 + TX73_004445 0.86 -2.4
959,680 - TX73_004445 0.86 +1.1
959,686 + TX73_004445 0.87 -2.2
959,697 + TX73_004445 0.88 -4.1
959,716 + TX73_004445 0.90 -1.8
959,724 - -2.3
959,741 + -0.9
959,744 - -1.5
959,746 + -2.5
959,746 + -0.9
959,761 + -1.2
959,768 + -2.2
959,776 - -3.1
959,776 - -3.9
959,788 + -2.0
959,796 - -3.6
959,813 - -0.3
959,823 + -0.7
959,900 + +0.7
959,925 - +0.3
959,936 + TX73_004450 0.11 +0.0
959,936 + TX73_004450 0.11 -0.4
959,944 - TX73_004450 0.13 -0.6
959,960 + TX73_004450 0.15 -0.6
959,981 - TX73_004450 0.18 +0.6
959,986 - TX73_004450 0.18 +0.0
959,988 - TX73_004450 0.19 -0.5
959,988 - TX73_004450 0.19 -0.9
959,990 + TX73_004450 0.19 -1.5
959,991 - TX73_004450 0.19 +1.5
960,033 + TX73_004450 0.25 -0.6
960,033 + TX73_004450 0.25 -0.7
960,056 + TX73_004450 0.28 +2.9
960,057 + TX73_004450 0.28 +1.1
960,070 + TX73_004450 0.30 +1.4
960,078 + TX73_004450 0.31 -0.4
960,078 - TX73_004450 0.31 +0.4
960,084 + TX73_004450 0.32 +0.3
960,086 - TX73_004450 0.32 +0.2
960,124 + TX73_004450 0.37 -0.5
960,132 - TX73_004450 0.39 +0.9
960,161 + TX73_004450 0.43 +0.8
960,161 + TX73_004450 0.43 +0.7
960,216 - TX73_004450 0.50 -0.2
960,228 + TX73_004450 0.52 +0.2
960,230 + TX73_004450 0.52 +2.0
960,238 - TX73_004450 0.53 -0.4
960,262 - TX73_004450 0.57 +0.2
960,266 + TX73_004450 0.57 -1.2
960,266 + TX73_004450 0.57 +0.9
960,304 + TX73_004450 0.62 -0.5
960,312 - TX73_004450 0.63 -0.3
960,312 - TX73_004450 0.63 +2.1
960,329 + TX73_004450 0.66 +0.7
960,352 + TX73_004450 0.69 -0.5
960,382 + TX73_004450 0.73 +0.2
960,390 - TX73_004450 0.74 +1.1
960,390 - TX73_004450 0.74 -1.6
960,390 - TX73_004450 0.74 -0.4
960,398 + TX73_004450 0.75 -0.7
960,413 + TX73_004450 0.77 +0.4
960,435 - TX73_004450 0.80 +0.9
960,435 - TX73_004450 0.80 +1.1
960,448 + TX73_004450 0.82 -0.4
960,457 - TX73_004450 0.84 +0.4
960,463 + TX73_004450 0.84 +0.3
960,473 - TX73_004450 0.86 +1.2
960,474 - TX73_004450 0.86 +0.1
960,474 - TX73_004450 0.86 -0.5
960,474 - TX73_004450 0.86 +2.4
960,474 - TX73_004450 0.86 -1.0
960,478 - TX73_004450 0.86 +1.1
960,478 - TX73_004450 0.86 -0.2
960,491 + TX73_004450 0.88 -0.6
960,511 + +0.6
960,530 + -0.5
960,540 + +0.6
960,651 + -0.1
960,670 + -0.1
960,678 - TX73_004455 0.11 +0.0
960,679 - TX73_004455 0.11 -0.2
960,707 + TX73_004455 0.18 +0.3
960,741 + TX73_004455 0.26 -0.7
960,799 + TX73_004455 0.41 +0.2

Or see this region's nucleotide sequence