Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_004645

Experiment: PM with succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate (C)
1,004,105	-		TX73_004635	0.75	-0.1
1,004,119	+		TX73_004635	0.78	+0.1
1,004,119	+		TX73_004635	0.78	+0.8
1,004,119	+		TX73_004635	0.78	+0.6
1,004,123	+		TX73_004635	0.78	+0.3
1,004,127	-		TX73_004635	0.79	+1.7
1,004,127	-		TX73_004635	0.79	-1.3
1,004,149	+		TX73_004635	0.82	-1.1
1,004,183	+		TX73_004635	0.88	+0.3
1,004,183	+		TX73_004635	0.88	-0.2
1,004,183	+		TX73_004635	0.88	+0.6
1,004,194	+		TX73_004635	0.89	+0.2
1,004,196	-		TX73_004635	0.90	+1.4
1,004,207	-				-0.3
1,004,251	-				+0.4
1,004,256	-				+0.5
1,004,262	-				+0.4
1,004,262	-				-0.2
1,004,273	+				+0.3
1,004,281	-				+0.3
1,004,281	-				-0.4
1,004,283	-				-0.5
1,004,308	+				-0.4
1,004,316	-				+0.9
1,004,318	+				+0.5
1,004,323	+				-0.1
1,004,323	+				+0.5
1,004,331	-				+0.7
1,004,339	+				+0.2
1,004,359	+		TX73_004640	0.11	+1.1
1,004,367	-		TX73_004640	0.12	-0.1
1,004,369	-		TX73_004640	0.12	-1.0
1,004,371	+		TX73_004640	0.12	+0.1
1,004,377	-		TX73_004640	0.13	-0.6
1,004,420	-		TX73_004640	0.19	-0.8
1,004,431	+		TX73_004640	0.20	-0.3
1,004,431	+		TX73_004640	0.20	-0.1
1,004,452	+		TX73_004640	0.23	-0.5
1,004,460	-		TX73_004640	0.24	+0.1
1,004,465	-		TX73_004640	0.25	+0.3
1,004,477	+		TX73_004640	0.27	-0.6
1,004,485	-		TX73_004640	0.28	-0.9
1,004,500	+		TX73_004640	0.30	-1.1
1,004,539	+		TX73_004640	0.35	+0.5
1,004,566	-		TX73_004640	0.38	-0.7
1,004,614	+		TX73_004640	0.45	-0.1
1,004,674	-		TX73_004640	0.53	+0.5
1,004,676	+		TX73_004640	0.53	-1.0
1,004,695	-		TX73_004640	0.56	+0.6
1,004,727	-		TX73_004640	0.60	+0.3
1,004,734	-		TX73_004640	0.61	-1.0
1,004,750	-		TX73_004640	0.63	+0.1
1,004,750	-		TX73_004640	0.63	-0.4
1,004,755	+		TX73_004640	0.63	+0.9
1,004,757	+		TX73_004640	0.64	+0.1
1,004,801	-		TX73_004640	0.70	-0.1
1,004,834	+		TX73_004640	0.74	-0.6
1,004,898	+		TX73_004640	0.82	+0.4
1,004,917	+		TX73_004640	0.85	+0.4
1,004,934	+		TX73_004640	0.87	-0.1
1,004,934	+		TX73_004640	0.87	+0.6
1,004,951	+		TX73_004640	0.90	+0.3
1,004,968	+				+0.1
1,004,976	-				-0.6
1,004,976	-				-1.9
1,005,004	-				-0.2
1,005,029	+				+1.1
1,005,037	-				+2.0
1,005,073	-				-0.5
1,005,075	+				-0.7
1,005,075	+				+0.9
1,005,075	+				-0.1
1,005,075	+				+0.5
1,005,075	+				+0.4
1,005,083	-				+0.7
1,005,083	-				-0.7
1,005,083	-				-0.1
1,005,083	-				-0.2
1,005,083	-				-0.2
1,005,083	-				-0.7
1,005,083	-				+0.2
1,005,102	+				+1.0
1,005,102	+				-0.1
1,005,110	-				-0.1
1,005,110	-				+1.4
1,005,113	-				+1.4
1,005,115	-				+0.2
1,005,117	+				+0.2
1,005,122	+		TX73_004645	0.10	-0.4
1,005,149	-		TX73_004645	0.17	+0.4
1,005,186	+		TX73_004645	0.25	+0.6
1,005,188	+		TX73_004645	0.26	+1.1
1,005,197	+		TX73_004645	0.28	+0.2
1,005,217	+		TX73_004645	0.32	+0.2
1,005,225	-		TX73_004645	0.34	+0.6
1,005,308	-		TX73_004645	0.53	+0.2
1,005,319	-		TX73_004645	0.56	-0.4
1,005,333	+		TX73_004645	0.59	+0.3
1,005,386	+		TX73_004645	0.72	-1.6
1,005,402	-		TX73_004645	0.75	+0.2
1,005,416	-		TX73_004645	0.78	+1.4
1,005,416	-		TX73_004645	0.78	+0.5
1,005,484	+				-0.8
1,005,484	+				+0.3
1,005,495	-				+0.6
1,005,591	+				-0.0
1,005,591	+				+1.7
1,005,599	-				-0.4
1,005,604	-				+1.5
1,005,604	-				-0.0
1,005,606	+				-0.9
1,005,609	-				+2.2
1,005,633	-		TX73_004650	0.11	-0.0
1,005,633	-		TX73_004650	0.11	+0.3
1,005,648	-		TX73_004650	0.13	-0.5
1,005,650	-		TX73_004650	0.14	-1.1
1,005,665	+		TX73_004650	0.16	-0.3
1,005,666	-		TX73_004650	0.16	+0.4
1,005,671	-		TX73_004650	0.17	-0.6
1,005,678	-		TX73_004650	0.18	+1.2
1,005,682	-		TX73_004650	0.19	-0.3
1,005,689	+		TX73_004650	0.20	-2.4
1,005,691	-		TX73_004650	0.21	+0.5
1,005,693	+		TX73_004650	0.21	-0.8
1,005,726	+		TX73_004650	0.26	+0.1
1,005,726	+		TX73_004650	0.26	+0.4
1,005,756	+		TX73_004650	0.32	-0.4
1,005,756	+		TX73_004650	0.32	-1.1
1,005,756	+		TX73_004650	0.32	+0.2
1,005,764	-		TX73_004650	0.33	-0.1
1,005,764	-		TX73_004650	0.33	+0.1
1,005,801	+		TX73_004650	0.39	-1.0
1,005,809	-		TX73_004650	0.41	-0.2
1,005,810	-		TX73_004650	0.41	-0.2
1,005,814	+		TX73_004650	0.42	-0.7
1,005,822	-		TX73_004650	0.43	+0.5
1,005,822	-		TX73_004650	0.43	+0.1
1,005,861	-		TX73_004650	0.50	-0.6
1,005,888	-		TX73_004650	0.54	+0.2
1,005,922	+		TX73_004650	0.60	+0.5
1,005,922	+		TX73_004650	0.60	-0.5
1,005,927	-		TX73_004650	0.61	+0.3
1,005,930	-		TX73_004650	0.61	+0.2
1,005,965	+		TX73_004650	0.67	+0.1
1,005,965	+		TX73_004650	0.67	-0.8
1,005,974	-		TX73_004650	0.69	+0.2
1,005,985	+		TX73_004650	0.71	-0.1
1,005,985	+		TX73_004650	0.71	-0.6
1,005,993	-		TX73_004650	0.72	-1.7
1,005,993	-		TX73_004650	0.72	+2.0
1,005,997	-		TX73_004650	0.73	+0.2
1,006,016	-		TX73_004650	0.76	+0.8
1,006,058	-		TX73_004650	0.83	+0.6
1,006,060	+		TX73_004650	0.84	-0.0
1,006,068	-		TX73_004650	0.85	+0.4
1,006,068	-		TX73_004650	0.85	+1.2
1,006,075	+		TX73_004650	0.86	+0.9
1,006,075	+		TX73_004650	0.86	-0.5
1,006,102	+				-0.1
1,006,115	+				-0.0
1,006,120	-				-0.7
1,006,134	+				-0.5
1,006,134	+				+0.9
1,006,142	-				+0.9
1,006,142	-				-1.2
1,006,156	+				-0.2
1,006,158	+				-1.4
1,006,163	+				+1.2
1,006,164	+				+0.2
1,006,169	+				+0.5
1,006,169	+				-0.4
1,006,169	+				+0.4
1,006,177	-				-0.3