Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_010100

Experiment: PM with 4-Hydroxybenzoic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with 4-Hydroxybenzoic Acid (C)
2,202,628	+		TX73_010090	0.88	+0.3
2,202,628	+		TX73_010090	0.88	+0.1
2,202,702	-				-0.3
2,202,702	-				+1.7
2,202,740	+				-1.1
2,202,753	-				+0.9
2,202,755	+				-0.4
2,202,758	-				-0.0
2,202,763	-				-0.1
2,202,763	-				-0.5
2,202,765	+				+2.5
2,202,768	-				+0.6
2,202,772	+				+0.8
2,202,772	+				-0.0
2,202,780	-				+0.1
2,202,789	-				-0.6
2,202,804	+				-0.9
2,202,812	-				-0.5
2,202,866	+				+0.6
2,202,889	-				-0.5
2,202,895	-				-0.8
2,202,926	+		TX73_010095	0.11	-0.3
2,202,950	+		TX73_010095	0.15	-0.3
2,202,968	+		TX73_010095	0.18	+0.5
2,202,976	-		TX73_010095	0.19	-1.3
2,202,976	-		TX73_010095	0.19	-2.6
2,202,976	-		TX73_010095	0.19	-1.2
2,202,976	-		TX73_010095	0.19	-1.3
2,203,051	+		TX73_010095	0.31	-0.3
2,203,051	+		TX73_010095	0.31	+1.4
2,203,059	-		TX73_010095	0.32	-2.3
2,203,059	-		TX73_010095	0.32	+2.0
2,203,059	-		TX73_010095	0.32	-1.0
2,203,059	-		TX73_010095	0.32	-0.3
2,203,064	-		TX73_010095	0.33	+1.7
2,203,114	-		TX73_010095	0.41	-1.2
2,203,148	-		TX73_010095	0.46	-1.5
2,203,186	-		TX73_010095	0.53	-0.9
2,203,192	-		TX73_010095	0.54	+0.1
2,203,216	-		TX73_010095	0.57	-1.1
2,203,240	-		TX73_010095	0.61	+1.1
2,203,240	-		TX73_010095	0.61	-0.6
2,203,336	+		TX73_010095	0.77	-0.5
2,203,377	+		TX73_010095	0.83	+1.6
2,203,390	-		TX73_010095	0.85	-0.1
2,203,390	-		TX73_010095	0.85	-0.1
2,203,390	-		TX73_010095	0.85	+0.2
2,203,390	-		TX73_010095	0.85	-1.1
2,203,390	-		TX73_010095	0.85	+1.4
2,203,390	-		TX73_010095	0.85	+0.1
2,203,390	-		TX73_010095	0.85	+1.7
2,203,392	-		TX73_010095	0.86	+0.5
2,203,437	+				-1.6
2,203,437	+				+1.1
2,203,444	+				+0.7
2,203,445	-				-1.7
2,203,452	-				-0.3
2,203,452	-				-0.0
2,203,452	-				-0.3
2,203,477	+				+0.5
2,203,549	+				-0.5
2,203,557	-				-0.7
2,203,584	+				-0.3
2,203,602	+				+0.6
2,203,605	-				+0.1
2,203,627	-				+0.2
2,203,631	-				-0.2
2,203,666	+				-0.4
2,203,668	+				+0.2
2,203,673	+		TX73_010100	0.10	+0.5
2,203,681	-		TX73_010100	0.11	-1.1
2,203,683	+		TX73_010100	0.11	-1.5
2,203,683	+		TX73_010100	0.11	+0.6
2,203,683	+		TX73_010100	0.11	-3.3
2,203,683	+		TX73_010100	0.11	-0.1
2,203,684	+		TX73_010100	0.11	+0.2
2,203,691	-		TX73_010100	0.12	+0.1
2,203,691	-		TX73_010100	0.12	+0.2
2,203,691	-		TX73_010100	0.12	-0.7
2,203,692	-		TX73_010100	0.12	+0.2
2,203,692	-		TX73_010100	0.12	+0.2
2,203,692	-		TX73_010100	0.12	-1.0
2,203,717	-		TX73_010100	0.14	-1.2
2,203,719	+		TX73_010100	0.15	-1.4
2,203,732	-		TX73_010100	0.16	-1.4
2,203,737	-		TX73_010100	0.16	-1.1
2,203,780	+		TX73_010100	0.20	+1.6
2,203,785	-		TX73_010100	0.21	+0.1
2,203,787	-		TX73_010100	0.21	-0.9
2,203,796	+		TX73_010100	0.22	+0.0
2,203,806	-		TX73_010100	0.22	-0.3
2,203,809	+		TX73_010100	0.23	+2.9
2,203,809	+		TX73_010100	0.23	-0.3
2,203,823	+		TX73_010100	0.24	+0.3
2,203,835	+		TX73_010100	0.25	-0.6
2,203,843	-		TX73_010100	0.26	-0.3
2,203,871	+		TX73_010100	0.28	+0.5
2,203,879	-		TX73_010100	0.29	+0.0
2,203,882	+		TX73_010100	0.29	+0.6
2,203,890	-		TX73_010100	0.30	-0.7
2,203,900	+		TX73_010100	0.31	-0.3
2,203,900	+		TX73_010100	0.31	-0.3
2,203,900	-		TX73_010100	0.31	+0.0
2,203,908	-		TX73_010100	0.32	-4.2
2,203,908	-		TX73_010100	0.32	-0.6
2,203,941	-		TX73_010100	0.35	-0.8
2,203,998	+		TX73_010100	0.40	-0.2
2,204,008	+		TX73_010100	0.41	-0.1
2,204,016	-		TX73_010100	0.42	-0.2
2,204,028	-		TX73_010100	0.43	-0.2
2,204,035	-		TX73_010100	0.44	-1.0
2,204,035	-		TX73_010100	0.44	-1.7
2,204,049	+		TX73_010100	0.45	-1.7
2,204,059	+		TX73_010100	0.46	-0.9
2,204,064	+		TX73_010100	0.46	-0.3
2,204,064	+		TX73_010100	0.46	+0.5
2,204,066	+		TX73_010100	0.46	-1.0
2,204,072	-		TX73_010100	0.47	-0.0
2,204,072	-		TX73_010100	0.47	-0.9
2,204,072	-		TX73_010100	0.47	-0.2
2,204,072	-		TX73_010100	0.47	-1.3
2,204,072	-		TX73_010100	0.47	-0.6
2,204,077	-		TX73_010100	0.47	+0.3
2,204,097	+		TX73_010100	0.49	-0.7
2,204,160	-		TX73_010100	0.55	-2.3
2,204,160	-		TX73_010100	0.55	-0.6
2,204,188	+		TX73_010100	0.58	-0.0
2,204,196	-		TX73_010100	0.58	-1.0
2,204,198	-		TX73_010100	0.58	-0.4
2,204,198	-		TX73_010100	0.58	+0.7
2,204,207	-		TX73_010100	0.59	+0.1
2,204,251	-		TX73_010100	0.63	+0.6
2,204,264	-		TX73_010100	0.65	-2.9
2,204,279	+		TX73_010100	0.66	-0.1
2,204,279	+		TX73_010100	0.66	+0.1
2,204,283	-		TX73_010100	0.66	-0.7
2,204,376	+		TX73_010100	0.75	+0.3
2,204,404	+		TX73_010100	0.77	-0.7
2,204,407	-		TX73_010100	0.78	-0.5
2,204,438	-		TX73_010100	0.81	-1.5
2,204,438	-		TX73_010100	0.81	-1.0
2,204,460	-		TX73_010100	0.83	-0.9
2,204,460	-		TX73_010100	0.83	-0.5
2,204,460	-		TX73_010100	0.83	+0.8
2,204,462	+		TX73_010100	0.83	+0.7
2,204,498	-		TX73_010100	0.86	-0.5
2,204,503	+		TX73_010100	0.87	+1.7
2,204,505	+		TX73_010100	0.87	-0.3
2,204,506	-		TX73_010100	0.87	-1.7
2,204,513	-		TX73_010100	0.87	-1.2
2,204,513	-		TX73_010100	0.87	-1.3
2,204,514	-		TX73_010100	0.88	-0.8
2,204,537	-		TX73_010100	0.90	-0.7
2,204,555	+				+0.5
2,204,614	+				-0.5
2,204,617	-				-1.4
2,204,650	-				-0.9
2,204,711	+				+0.6
2,204,739	+				+0.4
2,204,794	-		TX73_010105	0.14	+1.7
2,204,824	+		TX73_010105	0.17	-0.2
2,204,877	+		TX73_010105	0.22	-1.9
2,204,886	+		TX73_010105	0.22	-1.0
2,204,894	-		TX73_010105	0.23	-1.0
2,204,935	+		TX73_010105	0.27	-1.0
2,204,943	-		TX73_010105	0.28	+0.3
2,204,948	-		TX73_010105	0.28	+0.5
2,204,957	-		TX73_010105	0.29	+0.3
2,204,975	+		TX73_010105	0.31	-2.2
2,205,014	+		TX73_010105	0.34	-1.3
2,205,046	-		TX73_010105	0.37	-0.7
2,205,047	+		TX73_010105	0.37	+0.3
2,205,049	+		TX73_010105	0.38	+0.1
2,205,052	+		TX73_010105	0.38	-0.1
2,205,052	+		TX73_010105	0.38	-0.3
2,205,052	+		TX73_010105	0.38	-1.0
2,205,054	+		TX73_010105	0.38	-0.5
2,205,057	+		TX73_010105	0.38	-0.7
2,205,062	+		TX73_010105	0.39	-1.1
2,205,070	-		TX73_010105	0.39	-0.2
2,205,088	-		TX73_010105	0.41	+1.3
2,205,095	+		TX73_010105	0.42	-1.4
2,205,105	+		TX73_010105	0.43	-1.0
2,205,110	+		TX73_010105	0.43	+0.1
2,205,110	+		TX73_010105	0.43	-1.7
2,205,118	-		TX73_010105	0.44	-0.4
2,205,188	+		TX73_010105	0.50	-0.1
2,205,205	+		TX73_010105	0.52	-0.4
2,205,252	+		TX73_010105	0.56	-0.6
2,205,265	-		TX73_010105	0.58	-0.3
2,205,285	+		TX73_010105	0.59	+0.9
2,205,287	+		TX73_010105	0.60	-1.1
2,205,383	+		TX73_010105	0.69	-1.5
2,205,391	-		TX73_010105	0.69	+0.2
2,205,434	+		TX73_010105	0.73	+2.3
2,205,434	+		TX73_010105	0.73	-0.9
2,205,472	-		TX73_010105	0.77	+0.3
2,205,515	+		TX73_010105	0.81	+0.7
2,205,543	-		TX73_010105	0.84	-2.3
2,205,582	+		TX73_010105	0.87	+0.2
2,205,612	+				+0.7
2,205,612	+				+0.6
2,205,620	-				+0.3
2,205,620	-				-0.5
2,205,620	-				+0.3
2,205,620	-				-0.7
2,205,620	-				+0.4