Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_013345

Experiment: PM with 4-Hydroxybenzoic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with 4-Hydroxybenzoic Acid (C)
2,932,301	+		TX73_013335	0.53	+0.2
2,932,304	-		TX73_013335	0.54	+0.4
2,932,322	-		TX73_013335	0.55	+0.6
2,932,333	-		TX73_013335	0.56	-0.1
2,932,340	+		TX73_013335	0.57	-0.7
2,932,345	+		TX73_013335	0.57	+0.9
2,932,353	-		TX73_013335	0.58	+0.8
2,932,390	+		TX73_013335	0.61	+0.0
2,932,438	+		TX73_013335	0.65	+1.6
2,932,446	+		TX73_013335	0.66	-1.0
2,932,454	-		TX73_013335	0.67	-0.2
2,932,469	+		TX73_013335	0.68	+1.0
2,932,491	-		TX73_013335	0.70	-0.3
2,932,495	+		TX73_013335	0.70	-0.1
2,932,509	-		TX73_013335	0.72	+0.2
2,932,515	+		TX73_013335	0.72	+0.1
2,932,559	-		TX73_013335	0.76	+1.3
2,932,559	-		TX73_013335	0.76	-0.1
2,932,618	-		TX73_013335	0.81	-1.2
2,932,672	+		TX73_013335	0.86	-1.7
2,932,672	+		TX73_013335	0.86	-1.2
2,932,680	-		TX73_013335	0.87	-0.4
2,932,685	+		TX73_013335	0.87	-0.5
2,932,685	+		TX73_013335	0.87	-0.8
2,932,685	+		TX73_013335	0.87	-0.0
2,932,693	-		TX73_013335	0.88	+0.5
2,932,693	-		TX73_013335	0.88	+0.4
2,932,693	-		TX73_013335	0.88	-0.5
2,932,693	-		TX73_013335	0.88	+1.3
2,932,698	-		TX73_013335	0.88	+0.5
2,932,760	+				+0.9
2,932,765	+				+1.9
2,932,810	+				-0.8
2,932,815	-				-0.2
2,932,830	+				+0.5
2,932,854	-				+0.9
2,932,861	-				+1.2
2,932,880	+		TX73_013340	0.17	-0.6
2,932,880	-		TX73_013340	0.17	-0.2
2,932,888	-		TX73_013340	0.21	-0.9
2,932,888	-		TX73_013340	0.21	+0.4
2,932,893	-		TX73_013340	0.24	-0.2
2,932,953	+		TX73_013340	0.58	+0.7
2,932,953	+		TX73_013340	0.58	+0.5
2,932,961	-		TX73_013340	0.63	+1.1
2,932,961	-		TX73_013340	0.63	+0.8
2,933,009	+				+0.2
2,933,011	+				-0.2
2,933,033	+				+1.0
2,933,036	+				+0.5
2,933,057	+				+1.1
2,933,073	-				+0.0
2,933,173	+				+0.5
2,933,176	-				+0.2
2,933,197	-				+0.3
2,933,197	-				+0.5
2,933,200	+				+0.6
2,933,201	+				-0.5
2,933,219	-				+1.0
2,933,223	+				-0.5
2,933,234	-				+0.4
2,933,245	-				+0.1
2,933,267	-		TX73_013345	0.14	+0.2
2,933,269	+		TX73_013345	0.15	-0.9
2,933,273	+		TX73_013345	0.16	+0.1
2,933,277	-		TX73_013345	0.17	+1.0
2,933,288	+		TX73_013345	0.19	-0.1
2,933,314	-		TX73_013345	0.26	-0.3
2,933,323	-		TX73_013345	0.28	+0.3
2,933,324	+		TX73_013345	0.29	+0.3
2,933,332	-		TX73_013345	0.31	-1.1
2,933,334	+		TX73_013345	0.31	-1.2
2,933,334	+		TX73_013345	0.31	-0.1
2,933,365	-		TX73_013345	0.39	+0.3
2,933,369	+		TX73_013345	0.40	-0.2
2,933,389	+		TX73_013345	0.45	-0.0
2,933,389	+		TX73_013345	0.45	-3.4
2,933,397	-		TX73_013345	0.47	-0.5
2,933,397	-		TX73_013345	0.47	-0.9
2,933,407	-		TX73_013345	0.50	-0.4
2,933,441	-		TX73_013345	0.59	-1.2
2,933,442	-		TX73_013345	0.59	+0.4
2,933,449	-		TX73_013345	0.61	-0.5
2,933,454	-		TX73_013345	0.62	+0.3
2,933,456	+		TX73_013345	0.63	-2.7
2,933,474	+		TX73_013345	0.67	+0.7
2,933,474	+		TX73_013345	0.67	+0.4
2,933,474	+		TX73_013345	0.67	-1.6
2,933,477	-		TX73_013345	0.68	-0.7
2,933,495	+		TX73_013345	0.73	-0.1
2,933,495	-		TX73_013345	0.73	-0.5
2,933,500	-		TX73_013345	0.74	+0.3
2,933,500	-		TX73_013345	0.74	-2.5
2,933,512	+		TX73_013345	0.77	+0.1
2,933,512	+		TX73_013345	0.77	+0.2
2,933,524	+		TX73_013345	0.80	-1.0
2,933,546	+		TX73_013345	0.86	+0.7
2,933,551	-		TX73_013345	0.87	-0.7
2,933,553	-		TX73_013345	0.87	+1.1
2,933,558	-		TX73_013345	0.89	-0.6
2,933,558	-		TX73_013345	0.89	-0.1
2,933,591	+				+0.7
2,933,607	+				+0.3
2,933,618	-				+0.6
2,933,620	-				-0.5
2,933,636	+				+0.2
2,933,664	-				+0.3
2,933,672	-				-0.0
2,933,672	-				+0.4
2,933,679	+				+0.7
2,933,682	-				+0.2
2,933,689	+				+0.7
2,933,711	+				-0.7
2,933,714	+				+0.6
2,933,719	-				+0.9
2,933,720	-				+0.1
2,933,724	+				-1.7
2,933,736	+				-0.3
2,933,762	+				+0.5
2,933,770	-				+0.6
2,933,901	-				-0.9
2,933,901	-				+0.2
2,933,937	+				+1.4
2,933,959	+				+0.1
2,933,990	+				-1.1
2,933,995	+				+0.6
2,933,995	+				-0.2
2,933,998	-				-1.9
2,933,998	-				-1.5
2,934,003	-				-1.9
2,934,003	-				+1.7
2,934,003	-				-0.3
2,934,006	+				-1.9
2,934,006	+				+0.7
2,934,014	-				+0.0
2,934,024	-				+1.3
2,934,038	+				-1.6
2,934,046	-				+0.7
2,934,049	-				+0.9
2,934,059	-				-1.1
2,934,065	+				+0.1
2,934,075	+				+1.0
2,934,075	+				+2.7
2,934,083	-				+0.3
2,934,083	-				+0.7
2,934,091	-				-0.3
2,934,097	+				-0.2
2,934,107	-				+0.4
2,934,159	+				-0.2
2,934,172	-				-0.5
2,934,257	+		TX73_013355	0.21	-0.0
2,934,257	+		TX73_013355	0.21	+0.5
2,934,257	+		TX73_013355	0.21	+0.5
2,934,257	+		TX73_013355	0.21	+0.5
2,934,265	-		TX73_013355	0.22	-1.4
2,934,316	-		TX73_013355	0.29	-0.1
2,934,323	+		TX73_013355	0.30	+0.0
2,934,323	+		TX73_013355	0.30	+0.2
2,934,331	-		TX73_013355	0.32	+0.5
2,934,331	-		TX73_013355	0.32	+0.2
2,934,334	+		TX73_013355	0.32	+0.5
2,934,334	+		TX73_013355	0.32	-1.3
2,934,334	+		TX73_013355	0.32	+0.4
2,934,342	+		TX73_013355	0.33	-0.2
2,934,342	+		TX73_013355	0.33	-0.0
2,934,342	-		TX73_013355	0.33	-0.3
2,934,342	-		TX73_013355	0.33	+0.1
2,934,342	-		TX73_013355	0.33	-1.0
2,934,356	+		TX73_013355	0.35	-0.3
2,934,399	+		TX73_013355	0.42	+0.4
2,934,399	+		TX73_013355	0.42	+0.6
2,934,399	+		TX73_013355	0.42	+0.3
2,934,406	-		TX73_013355	0.43	-0.4
2,934,406	-		TX73_013355	0.43	-0.0
2,934,407	-		TX73_013355	0.43	-2.3
2,934,414	+		TX73_013355	0.44	+0.3
2,934,424	+		TX73_013355	0.46	-0.1
2,934,428	-		TX73_013355	0.46	+0.3
2,934,486	+		TX73_013355	0.55	-0.8
2,934,486	-		TX73_013355	0.55	+0.3
2,934,494	-		TX73_013355	0.56	+0.4
2,934,501	+		TX73_013355	0.57	+0.2
2,934,514	-		TX73_013355	0.59	-2.1
2,934,520	-		TX73_013355	0.60	+0.8
2,934,535	-		TX73_013355	0.62	+0.7
2,934,563	+		TX73_013355	0.67	+0.1
2,934,571	-		TX73_013355	0.68	-0.5
2,934,573	+		TX73_013355	0.68	-0.0
2,934,578	+		TX73_013355	0.69	+0.2
2,934,581	+		TX73_013355	0.69	-0.6
2,934,581	-		TX73_013355	0.69	+0.4
2,934,586	+		TX73_013355	0.70	-0.5
2,934,598	-		TX73_013355	0.72	+0.7
2,934,599	-		TX73_013355	0.72	-0.4