Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_022540

Experiment: PM with 4-Hydroxybenzoic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with 4-Hydroxybenzoic Acid (C)
4,901,008	+				-0.6
4,901,011	+				-1.1
4,901,013	+				+1.0
4,901,016	-				+0.2
4,901,019	-				+1.3
4,901,021	-				+0.1
4,901,037	+				+0.9
4,901,037	+				-1.2
4,901,045	-				-0.8
4,901,066	-				-1.0
4,901,099	-				+1.0
4,901,106	+		TX73_022535	0.11	+0.3
4,901,109	-		TX73_022535	0.12	-0.6
4,901,149	+		TX73_022535	0.21	-0.6
4,901,157	-		TX73_022535	0.23	-0.4
4,901,157	-		TX73_022535	0.23	-2.6
4,901,157	-		TX73_022535	0.23	+0.8
4,901,177	-		TX73_022535	0.28	-1.1
4,901,191	+		TX73_022535	0.31	+0.3
4,901,196	+		TX73_022535	0.32	-0.0
4,901,196	+		TX73_022535	0.32	+0.1
4,901,196	+		TX73_022535	0.32	+0.4
4,901,199	-		TX73_022535	0.33	+0.8
4,901,203	+		TX73_022535	0.34	-0.5
4,901,203	+		TX73_022535	0.34	+1.1
4,901,204	-		TX73_022535	0.34	+1.2
4,901,204	-		TX73_022535	0.34	-0.4
4,901,205	-		TX73_022535	0.34	+0.5
4,901,219	+		TX73_022535	0.37	-0.9
4,901,219	+		TX73_022535	0.37	+0.4
4,901,219	+		TX73_022535	0.37	-0.1
4,901,219	+		TX73_022535	0.37	-0.9
4,901,219	+		TX73_022535	0.37	-1.1
4,901,227	-		TX73_022535	0.39	+0.3
4,901,227	-		TX73_022535	0.39	-1.1
4,901,245	+		TX73_022535	0.43	-0.4
4,901,259	-		TX73_022535	0.47	-0.7
4,901,281	+		TX73_022535	0.52	+0.1
4,901,281	+		TX73_022535	0.52	+1.9
4,901,289	-		TX73_022535	0.54	+0.1
4,901,298	+		TX73_022535	0.56	+1.2
4,901,298	+		TX73_022535	0.56	-0.2
4,901,306	-		TX73_022535	0.57	+0.3
4,901,316	-		TX73_022535	0.60	-0.7
4,901,340	+		TX73_022535	0.65	+0.5
4,901,346	+		TX73_022535	0.67	+1.3
4,901,364	+		TX73_022535	0.71	+1.3
4,901,365	+		TX73_022535	0.71	-2.1
4,901,372	-		TX73_022535	0.73	+0.3
4,901,372	-		TX73_022535	0.73	+0.3
4,901,382	+		TX73_022535	0.75	+1.3
4,901,382	+		TX73_022535	0.75	+0.0
4,901,406	+		TX73_022535	0.80	+1.1
4,901,414	-		TX73_022535	0.82	-0.8
4,901,433	+		TX73_022535	0.87	+1.3
4,901,435	-		TX73_022535	0.87	+0.1
4,901,441	-		TX73_022535	0.89	+0.9
4,901,478	+				-0.5
4,901,484	+				-1.1
4,901,511	-				+2.1
4,901,525	+				+0.1
4,901,533	+				+2.3
4,901,533	-				+0.6
4,901,535	+				+0.3
4,901,535	+				+0.7
4,901,535	+				-0.2
4,901,535	+				+1.8
4,901,541	-				+0.2
4,901,541	-				+0.2
4,901,543	-				-0.2
4,901,547	+				-0.5
4,901,591	-				-0.4
4,901,658	-				-0.5
4,901,692	+				+0.3
4,901,693	+				-1.3
4,901,693	+				+0.7
4,901,693	+				-0.3
4,901,708	-				+0.7
4,901,731	+				-0.3
4,901,745	-				+0.6
4,901,780	-				+1.5
4,901,787	+				+1.3
4,901,805	+				+0.4
4,901,899	+				+0.2
4,901,904	-				-0.0
4,901,971	+				-0.7
4,901,971	+				+0.7
4,901,971	+				-0.1
4,901,974	-				+0.1
4,901,976	+				+0.1
4,901,979	-				+0.1
4,901,979	-				+0.1
4,901,979	-				+0.2
4,901,984	-				+0.3
4,901,991	-				+0.7
4,902,021	-		TX73_022540	0.11	+1.3
4,902,031	+		TX73_022540	0.13	+0.3
4,902,059	-		TX73_022540	0.19	+0.4
4,902,109	-		TX73_022540	0.31	+0.6
4,902,122	+		TX73_022540	0.34	+0.6
4,902,132	+		TX73_022540	0.36	-1.1
4,902,150	-		TX73_022540	0.41	+0.4
4,902,150	-		TX73_022540	0.41	+0.1
4,902,173	+		TX73_022540	0.46	+1.3
4,902,181	-		TX73_022540	0.48	-1.0
4,902,186	-		TX73_022540	0.49	+0.3
4,902,186	-		TX73_022540	0.49	+0.0
4,902,206	-		TX73_022540	0.53	+0.3
4,902,217	+		TX73_022540	0.56	-0.2
4,902,236	-		TX73_022540	0.60	+0.8
4,902,268	-		TX73_022540	0.68	-0.2
4,902,269	+		TX73_022540	0.68	+0.9
4,902,269	-		TX73_022540	0.68	+0.8
4,902,312	-		TX73_022540	0.78	-0.1
4,902,338	+		TX73_022540	0.84	+0.4
4,902,340	+		TX73_022540	0.84	+0.8
4,902,348	+		TX73_022540	0.86	+0.1
4,902,348	+		TX73_022540	0.86	+0.2
4,902,348	+		TX73_022540	0.86	+0.3
4,902,348	+		TX73_022540	0.86	+0.0
4,902,348	+		TX73_022540	0.86	+1.0
4,902,348	+		TX73_022540	0.86	-0.2
4,902,348	+		TX73_022540	0.86	-0.7
4,902,356	-		TX73_022540	0.88	-0.9
4,902,356	-		TX73_022540	0.88	-0.2
4,902,356	-		TX73_022540	0.88	-1.4
4,902,356	-		TX73_022540	0.88	-0.5
4,902,356	-		TX73_022540	0.88	+0.6
4,902,356	-		TX73_022540	0.88	+1.5
4,902,356	-		TX73_022540	0.88	-0.0
4,902,368	+				+0.1
4,902,376	-				-0.4
4,902,421	-				-1.3
4,902,441	+				-0.4
4,902,444	-				+0.4
4,902,449	-				-0.2
4,902,474	+				-0.4
4,902,508	+				-0.3
4,902,537	+				-0.2
4,902,542	+				-0.7
4,902,578	-				+0.0
4,902,585	+				-0.8
4,902,585	+				-0.4
4,902,593	-				+1.3
4,902,593	-				-0.5
4,902,597	+				-0.3
4,902,599	-				+0.1
4,902,627	+				-0.4
4,902,627	+				-0.4
4,902,637	+				+1.1
4,902,637	+				+0.2
4,902,645	-				+1.3
4,902,646	+				+0.5
4,902,646	-				+0.5
4,902,648	+				-0.3
4,902,650	-				+1.3
4,902,654	-				+2.4
4,902,655	-				+0.5
4,902,656	+				-0.1
4,902,664	-		TX73_022545	0.11	-0.4
4,902,733	-		TX73_022545	0.27	+0.7
4,902,759	+		TX73_022545	0.33	+1.3
4,902,800	-		TX73_022545	0.42	-1.3
4,902,805	+		TX73_022545	0.43	+0.3
4,902,813	-		TX73_022545	0.45	+0.7
4,902,813	-		TX73_022545	0.45	+0.4
4,902,815	+		TX73_022545	0.46	+1.5
4,902,848	+		TX73_022545	0.53	+1.6
4,902,899	+		TX73_022545	0.65	+0.1
4,902,911	+		TX73_022545	0.67	-1.2
4,902,913	+		TX73_022545	0.68	+0.4
4,902,921	+		TX73_022545	0.70	-0.8
4,902,926	+		TX73_022545	0.71	-0.5
4,902,957	+		TX73_022545	0.78	-2.5
4,902,965	-		TX73_022545	0.80	-0.2
4,902,967	-		TX73_022545	0.80	+1.1
4,902,989	+		TX73_022545	0.85	-1.1
4,903,016	+				-0.5
4,903,018	+				-0.5
4,903,043	+				-0.1
4,903,048	+				+0.2
4,903,050	+				+0.8
4,903,066	-				+0.7
4,903,070	-				-1.1
4,903,093	-				+0.7
4,903,093	-				+0.1
4,903,104	-				-0.6
4,903,114	-				+0.8
4,903,195	+				+0.3
4,903,203	-				-0.8
4,903,231	+		TX73_022550	0.18	-1.3
4,903,231	+		TX73_022550	0.18	-0.2
4,903,236	+		TX73_022550	0.22	+0.2
4,903,244	-		TX73_022550	0.27	+0.3
4,903,253	+		TX73_022550	0.33	-1.5
4,903,253	+		TX73_022550	0.33	+1.7
4,903,253	+		TX73_022550	0.33	-0.3
4,903,259	-		TX73_022550	0.37	-1.3
4,903,259	-		TX73_022550	0.37	-1.2
4,903,259	-		TX73_022550	0.37	-1.8
4,903,261	-		TX73_022550	0.39	+0.1
4,903,261	-		TX73_022550	0.39	+0.2
4,903,261	-		TX73_022550	0.39	+0.8
4,903,280	-		TX73_022550	0.52	-0.6
4,903,290	-		TX73_022550	0.59	-0.1
4,903,325	-		TX73_022550	0.82	-0.5
4,903,327	+		TX73_022550	0.84	-1.5
4,903,344	-				+0.1
4,903,363	+				-0.3
4,903,363	+				-0.2
4,903,376	-				+0.7
4,903,376	-				+0.4