Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS13885

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
3,011,686	+		ABIE51_RS13880	0.47	+1.0
3,011,686	+		ABIE51_RS13880	0.47	-0.0
3,011,686	+		ABIE51_RS13880	0.47	+0.9
3,011,686	+		ABIE51_RS13880	0.47	+1.1
3,011,686	+		ABIE51_RS13880	0.47	+1.2
3,011,686	+		ABIE51_RS13880	0.47	+1.0
3,011,687	-		ABIE51_RS13880	0.47	+2.0
3,011,687	-		ABIE51_RS13880	0.47	+1.3
3,011,687	-		ABIE51_RS13880	0.47	+1.5
3,011,687	-		ABIE51_RS13880	0.47	+1.4
3,011,687	-		ABIE51_RS13880	0.47	+0.8
3,011,806	+		ABIE51_RS13880	0.55	+1.6
3,011,806	+		ABIE51_RS13880	0.55	+1.1
3,011,806	+		ABIE51_RS13880	0.55	+0.8
3,011,806	+		ABIE51_RS13880	0.55	+1.2
3,011,806	+		ABIE51_RS13880	0.55	+0.7
3,011,806	+		ABIE51_RS13880	0.55	+1.2
3,011,807	-		ABIE51_RS13880	0.55	+1.2
3,011,807	-		ABIE51_RS13880	0.55	+1.1
3,011,807	-		ABIE51_RS13880	0.55	+0.8
3,011,807	-		ABIE51_RS13880	0.55	+1.9
3,011,822	-		ABIE51_RS13880	0.56	+1.2
3,011,982	+		ABIE51_RS13880	0.67	+0.7
3,011,982	+		ABIE51_RS13880	0.67	-0.8
3,011,982	+		ABIE51_RS13880	0.67	+1.3
3,011,983	-		ABIE51_RS13880	0.67	+1.7
3,011,983	-		ABIE51_RS13880	0.67	+1.2
3,011,983	-		ABIE51_RS13880	0.67	+1.5
3,012,050	+		ABIE51_RS13880	0.71	+1.8
3,012,094	+		ABIE51_RS13880	0.74	+1.8
3,012,094	+		ABIE51_RS13880	0.74	+1.1
3,012,094	+		ABIE51_RS13880	0.74	+1.9
3,012,094	+		ABIE51_RS13880	0.74	+1.1
3,012,094	+		ABIE51_RS13880	0.74	+1.2
3,012,095	-		ABIE51_RS13880	0.74	+1.0
3,012,095	-		ABIE51_RS13880	0.74	+1.0
3,012,670	-				+2.5
3,012,670	-				+2.2
3,012,733	-		ABIE51_RS13885	0.14	+2.3
3,012,733	-		ABIE51_RS13885	0.14	+2.3
3,012,733	-		ABIE51_RS13885	0.14	+1.8
3,012,954	-		ABIE51_RS13885	0.38	-1.4
3,013,313	-		ABIE51_RS13885	0.77	-2.8
3,013,354	-		ABIE51_RS13885	0.81	-1.7
3,013,354	-		ABIE51_RS13885	0.81	+0.2
3,013,354	-		ABIE51_RS13885	0.81	-2.3
3,013,354	-		ABIE51_RS13885	0.81	-1.7
3,013,495	+				-1.7
3,013,496	-				+0.9
3,013,496	-				-1.3
3,013,496	-				-0.2
3,013,617	+		ABIE51_RS13890	0.15	-3.4
3,013,655	+		ABIE51_RS13890	0.21	-2.5
3,013,655	+		ABIE51_RS13890	0.21	-2.2
3,013,656	-		ABIE51_RS13890	0.22	-1.9
3,013,656	-		ABIE51_RS13890	0.22	-2.0
3,013,708	+		ABIE51_RS13890	0.30	-4.1
3,013,709	-		ABIE51_RS13890	0.30	-1.6
3,013,729	+		ABIE51_RS13890	0.33	-1.7
3,013,729	+		ABIE51_RS13890	0.33	-2.7
3,013,729	+		ABIE51_RS13890	0.33	-2.5
3,013,730	-		ABIE51_RS13890	0.33	-3.1
3,013,730	-		ABIE51_RS13890	0.33	-3.5
3,013,881	+		ABIE51_RS13890	0.58	-4.2
3,013,908	+		ABIE51_RS13890	0.62	-3.1
3,013,908	+		ABIE51_RS13890	0.62	-3.7
3,013,908	+		ABIE51_RS13890	0.62	-1.6
3,013,908	+		ABIE51_RS13890	0.62	-3.7
3,013,908	+		ABIE51_RS13890	0.62	-1.6
3,013,908	+		ABIE51_RS13890	0.62	-2.8
3,013,908	+		ABIE51_RS13890	0.62	-2.4
3,013,908	+		ABIE51_RS13890	0.62	-3.1
3,013,908	+		ABIE51_RS13890	0.62	-0.6
3,013,908	+		ABIE51_RS13890	0.62	+0.4
3,013,908	+		ABIE51_RS13890	0.62	-1.7
3,013,908	+		ABIE51_RS13890	0.62	-2.0
3,013,908	+		ABIE51_RS13890	0.62	-1.0
3,013,908	+		ABIE51_RS13890	0.62	-4.4
3,013,908	+		ABIE51_RS13890	0.62	-2.8
3,013,908	+		ABIE51_RS13890	0.62	-2.8
3,013,908	+		ABIE51_RS13890	0.62	-1.7
3,013,908	+		ABIE51_RS13890	0.62	-3.1
3,013,908	+		ABIE51_RS13890	0.62	-1.6
3,013,909	-		ABIE51_RS13890	0.62	-1.3
3,013,909	-		ABIE51_RS13890	0.62	-3.2
3,013,909	-		ABIE51_RS13890	0.62	-2.6
3,013,909	-		ABIE51_RS13890	0.62	-0.6
3,013,909	-		ABIE51_RS13890	0.62	-1.4
3,013,909	-		ABIE51_RS13890	0.62	-2.5
3,013,909	-		ABIE51_RS13890	0.62	-2.8
3,013,909	-		ABIE51_RS13890	0.62	-2.9
3,013,909	-		ABIE51_RS13890	0.62	-2.9
3,013,909	-		ABIE51_RS13890	0.62	-3.0
3,013,909	-		ABIE51_RS13890	0.62	-3.1
3,013,909	-		ABIE51_RS13890	0.62	-3.6
3,013,909	-		ABIE51_RS13890	0.62	-3.0
3,013,909	-		ABIE51_RS13890	0.62	-2.9
3,013,909	-		ABIE51_RS13890	0.62	-3.8
3,013,909	-		ABIE51_RS13890	0.62	-3.6
3,013,909	-		ABIE51_RS13890	0.62	-1.8
3,013,909	-		ABIE51_RS13890	0.62	-2.8
3,013,909	-		ABIE51_RS13890	0.62	-2.7
3,013,910	+		ABIE51_RS13890	0.62	-3.7
3,013,910	+		ABIE51_RS13890	0.62	-2.9
3,013,910	+		ABIE51_RS13890	0.62	-0.8
3,013,910	+		ABIE51_RS13890	0.62	-0.2
3,013,910	+		ABIE51_RS13890	0.62	-3.2
3,013,910	+		ABIE51_RS13890	0.62	-3.8
3,013,910	+		ABIE51_RS13890	0.62	-3.6
3,013,910	+		ABIE51_RS13890	0.62	-3.9
3,013,910	+		ABIE51_RS13890	0.62	-4.1
3,013,910	+		ABIE51_RS13890	0.62	-3.4
3,013,911	-		ABIE51_RS13890	0.63	-2.2
3,013,911	-		ABIE51_RS13890	0.63	-4.0
3,013,911	-		ABIE51_RS13890	0.63	-4.1
3,013,911	-		ABIE51_RS13890	0.63	-3.8
3,013,911	-		ABIE51_RS13890	0.63	-1.7
3,013,911	-		ABIE51_RS13890	0.63	-3.4
3,013,911	-		ABIE51_RS13890	0.63	-3.3
3,013,911	-		ABIE51_RS13890	0.63	-2.8
3,013,911	-		ABIE51_RS13890	0.63	-1.6
3,013,911	-		ABIE51_RS13890	0.63	-4.2
3,013,911	-		ABIE51_RS13890	0.63	-2.5
3,014,006	+		ABIE51_RS13890	0.78	-2.7
3,014,007	-		ABIE51_RS13890	0.78	-2.9
3,014,007	-		ABIE51_RS13890	0.78	-3.1
3,014,007	-		ABIE51_RS13890	0.78	-2.3
3,014,007	-		ABIE51_RS13890	0.78	-1.7
3,014,007	-		ABIE51_RS13890	0.78	-3.4
3,014,039	+		ABIE51_RS13890	0.83	-2.3
3,014,039	+		ABIE51_RS13890	0.83	-2.5
3,014,039	+		ABIE51_RS13890	0.83	-4.4
3,014,039	+		ABIE51_RS13890	0.83	-1.7
3,014,040	-		ABIE51_RS13890	0.83	-1.9
3,014,040	-		ABIE51_RS13890	0.83	-3.2
3,014,040	-		ABIE51_RS13890	0.83	-1.8
3,014,040	-		ABIE51_RS13890	0.83	-2.8
3,014,259	+				-0.4
3,014,259	+				+0.5
3,014,259	+				+0.4
3,014,362	+				+0.5
3,014,363	-				+1.6
3,014,363	-				+2.2
3,014,376	+				+1.1
3,014,377	-				+1.7
3,014,377	-				+1.7
3,014,377	-				+1.7
3,014,377	-				+2.1
3,014,377	-				+2.0
3,014,377	-				+2.6