Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06950

Experiment: Ying_OrganicAcid7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS06945 and ABIE51_RS06950 are separated by 161 nucleotidesABIE51_RS06950 and ABIE51_RS06955 overlap by 4 nucleotides ABIE51_RS06945: ABIE51_RS06945 - sulfotransferase, at 1,495,280 to 1,496,830 _RS06945 ABIE51_RS06950: ABIE51_RS06950 - RNA polymerase sigma factor, at 1,496,992 to 1,497,741 _RS06950 ABIE51_RS06955: ABIE51_RS06955 - FecR domain-containing protein, at 1,497,738 to 1,498,712 _RS06955 Position (kb) 1496 1497 1498Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1496.022 kb on - strand, within ABIE51_RS06945at 1496.205 kb on + strand, within ABIE51_RS06945at 1496.205 kb on + strand, within ABIE51_RS06945at 1496.206 kb on - strand, within ABIE51_RS06945at 1496.206 kb on - strand, within ABIE51_RS06945at 1496.206 kb on - strand, within ABIE51_RS06945at 1496.206 kb on - strand, within ABIE51_RS06945at 1496.207 kb on + strand, within ABIE51_RS06945at 1496.208 kb on - strand, within ABIE51_RS06945at 1496.208 kb on - strand, within ABIE51_RS06945at 1496.215 kb on + strand, within ABIE51_RS06945at 1496.216 kb on - strand, within ABIE51_RS06945at 1496.321 kb on + strand, within ABIE51_RS06945at 1496.514 kb on - strand, within ABIE51_RS06945at 1496.538 kb on - strand, within ABIE51_RS06945at 1496.550 kb on - strand, within ABIE51_RS06945at 1496.610 kb on - strand, within ABIE51_RS06945at 1496.786 kb on + strandat 1496.971 kb on + strandat 1496.972 kb on - strandat 1497.094 kb on + strand, within ABIE51_RS06950at 1497.094 kb on + strand, within ABIE51_RS06950at 1497.094 kb on + strand, within ABIE51_RS06950at 1497.095 kb on - strand, within ABIE51_RS06950at 1497.095 kb on - strand, within ABIE51_RS06950at 1497.346 kb on + strand, within ABIE51_RS06950at 1497.385 kb on + strand, within ABIE51_RS06950at 1497.385 kb on + strand, within ABIE51_RS06950at 1497.385 kb on + strand, within ABIE51_RS06950at 1497.385 kb on + strand, within ABIE51_RS06950at 1497.385 kb on + strand, within ABIE51_RS06950at 1497.386 kb on - strand, within ABIE51_RS06950at 1497.386 kb on - strand, within ABIE51_RS06950at 1497.386 kb on - strand, within ABIE51_RS06950at 1497.386 kb on - strand, within ABIE51_RS06950at 1497.386 kb on - strand, within ABIE51_RS06950at 1497.386 kb on - strand, within ABIE51_RS06950at 1497.386 kb on - strand, within ABIE51_RS06950at 1497.543 kb on - strand, within ABIE51_RS06950at 1497.586 kb on + strand, within ABIE51_RS06950at 1497.586 kb on + strand, within ABIE51_RS06950at 1497.586 kb on + strand, within ABIE51_RS06950at 1497.586 kb on + strand, within ABIE51_RS06950at 1497.586 kb on + strand, within ABIE51_RS06950at 1497.586 kb on + strand, within ABIE51_RS06950at 1497.586 kb on + strand, within ABIE51_RS06950at 1497.587 kb on - strand, within ABIE51_RS06950at 1497.587 kb on - strand, within ABIE51_RS06950at 1497.587 kb on - strand, within ABIE51_RS06950at 1497.616 kb on + strand, within ABIE51_RS06950at 1497.616 kb on + strand, within ABIE51_RS06950at 1497.616 kb on + strand, within ABIE51_RS06950at 1497.617 kb on - strand, within ABIE51_RS06950at 1497.696 kb on + strandat 1497.696 kb on + strandat 1497.697 kb on - strandat 1497.697 kb on - strandat 1498.080 kb on + strand, within ABIE51_RS06955at 1498.135 kb on + strand, within ABIE51_RS06955at 1498.136 kb on - strand, within ABIE51_RS06955at 1498.330 kb on + strand, within ABIE51_RS06955at 1498.330 kb on + strand, within ABIE51_RS06955at 1498.330 kb on + strand, within ABIE51_RS06955at 1498.331 kb on - strand, within ABIE51_RS06955at 1498.331 kb on - strand, within ABIE51_RS06955at 1498.331 kb on - strand, within ABIE51_RS06955at 1498.357 kb on + strand, within ABIE51_RS06955at 1498.357 kb on + strand, within ABIE51_RS06955at 1498.357 kb on + strand, within ABIE51_RS06955at 1498.357 kb on + strand, within ABIE51_RS06955at 1498.358 kb on - strand, within ABIE51_RS06955at 1498.358 kb on - strand, within ABIE51_RS06955at 1498.358 kb on - strand, within ABIE51_RS06955at 1498.358 kb on - strand, within ABIE51_RS06955at 1498.539 kb on + strand, within ABIE51_RS06955at 1498.539 kb on + strand, within ABIE51_RS06955at 1498.539 kb on + strand, within ABIE51_RS06955at 1498.539 kb on + strand, within ABIE51_RS06955at 1498.539 kb on + strand, within ABIE51_RS06955at 1498.540 kb on - strand, within ABIE51_RS06955at 1498.540 kb on - strand, within ABIE51_RS06955

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2
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1,496,022 - ABIE51_RS06945 0.48 +0.5
1,496,205 + ABIE51_RS06945 0.60 -0.3
1,496,205 + ABIE51_RS06945 0.60 +0.0
1,496,206 - ABIE51_RS06945 0.60 +0.2
1,496,206 - ABIE51_RS06945 0.60 +0.6
1,496,206 - ABIE51_RS06945 0.60 -0.5
1,496,206 - ABIE51_RS06945 0.60 +0.9
1,496,207 + ABIE51_RS06945 0.60 +1.0
1,496,208 - ABIE51_RS06945 0.60 +0.3
1,496,208 - ABIE51_RS06945 0.60 -0.0
1,496,215 + ABIE51_RS06945 0.60 +0.4
1,496,216 - ABIE51_RS06945 0.60 -0.2
1,496,321 + ABIE51_RS06945 0.67 -0.5
1,496,514 - ABIE51_RS06945 0.80 +0.4
1,496,538 - ABIE51_RS06945 0.81 -0.4
1,496,550 - ABIE51_RS06945 0.82 -0.1
1,496,610 - ABIE51_RS06945 0.86 +0.0
1,496,786 + +0.1
1,496,971 + -1.1
1,496,972 - -1.0
1,497,094 + ABIE51_RS06950 0.14 -2.4
1,497,094 + ABIE51_RS06950 0.14 +1.2
1,497,094 + ABIE51_RS06950 0.14 -1.7
1,497,095 - ABIE51_RS06950 0.14 +0.5
1,497,095 - ABIE51_RS06950 0.14 +1.0
1,497,346 + ABIE51_RS06950 0.47 +1.8
1,497,385 + ABIE51_RS06950 0.52 +1.5
1,497,385 + ABIE51_RS06950 0.52 +1.6
1,497,385 + ABIE51_RS06950 0.52 +1.8
1,497,385 + ABIE51_RS06950 0.52 +1.3
1,497,385 + ABIE51_RS06950 0.52 +1.9
1,497,386 - ABIE51_RS06950 0.53 +1.6
1,497,386 - ABIE51_RS06950 0.53 +1.5
1,497,386 - ABIE51_RS06950 0.53 +1.7
1,497,386 - ABIE51_RS06950 0.53 +0.7
1,497,386 - ABIE51_RS06950 0.53 +1.8
1,497,386 - ABIE51_RS06950 0.53 +1.7
1,497,386 - ABIE51_RS06950 0.53 +1.8
1,497,543 - ABIE51_RS06950 0.73 +1.5
1,497,586 + ABIE51_RS06950 0.79 +1.6
1,497,586 + ABIE51_RS06950 0.79 +1.9
1,497,586 + ABIE51_RS06950 0.79 +1.7
1,497,586 + ABIE51_RS06950 0.79 +1.4
1,497,586 + ABIE51_RS06950 0.79 +2.3
1,497,586 + ABIE51_RS06950 0.79 +1.7
1,497,586 + ABIE51_RS06950 0.79 +1.8
1,497,587 - ABIE51_RS06950 0.79 +1.5
1,497,587 - ABIE51_RS06950 0.79 +1.4
1,497,587 - ABIE51_RS06950 0.79 +1.8
1,497,616 + ABIE51_RS06950 0.83 +1.9
1,497,616 + ABIE51_RS06950 0.83 +1.9
1,497,616 + ABIE51_RS06950 0.83 +1.5
1,497,617 - ABIE51_RS06950 0.83 +2.0
1,497,696 + +0.9
1,497,696 + +1.2
1,497,697 - +1.2
1,497,697 - +1.1
1,498,080 + ABIE51_RS06955 0.35 +2.1
1,498,135 + ABIE51_RS06955 0.41 -3.2
1,498,136 - ABIE51_RS06955 0.41 -1.6
1,498,330 + ABIE51_RS06955 0.61 -1.1
1,498,330 + ABIE51_RS06955 0.61 -3.2
1,498,330 + ABIE51_RS06955 0.61 -3.3
1,498,331 - ABIE51_RS06955 0.61 -1.6
1,498,331 - ABIE51_RS06955 0.61 -2.4
1,498,331 - ABIE51_RS06955 0.61 -2.4
1,498,357 + ABIE51_RS06955 0.63 -2.7
1,498,357 + ABIE51_RS06955 0.63 -2.9
1,498,357 + ABIE51_RS06955 0.63 -2.8
1,498,357 + ABIE51_RS06955 0.63 -2.5
1,498,358 - ABIE51_RS06955 0.64 -2.4
1,498,358 - ABIE51_RS06955 0.64 -1.3
1,498,358 - ABIE51_RS06955 0.64 -1.9
1,498,358 - ABIE51_RS06955 0.64 -3.6
1,498,539 + ABIE51_RS06955 0.82 +1.9
1,498,539 + ABIE51_RS06955 0.82 +1.5
1,498,539 + ABIE51_RS06955 0.82 +1.4
1,498,539 + ABIE51_RS06955 0.82 +1.6
1,498,539 + ABIE51_RS06955 0.82 +1.6
1,498,540 - ABIE51_RS06955 0.82 +1.3
1,498,540 - ABIE51_RS06955 0.82 +1.4

Or see this region's nucleotide sequence