Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04075 and ABIE51_RS04080 are separated by 117 nucleotides ABIE51_RS04080 and ABIE51_RS04085 overlap by 4 nucleotides ABIE51_RS04085 and ABIE51_RS04090 are separated by 82 nucleotides ABIE51_RS04090 and ABIE51_RS04095 are separated by 72 nucleotides
ABIE51_RS04075: ABIE51_RS04075 - 4-hydroxyphenylpyruvate dioxygenase, at 886,007 to 887,101
_RS04075
ABIE51_RS04080: ABIE51_RS04080 - DUF559 domain-containing protein, at 887,219 to 887,632
_RS04080
ABIE51_RS04085: ABIE51_RS04085 - homogentisate 1,2-dioxygenase, at 887,629 to 888,936
_RS04085
ABIE51_RS04090: ABIE51_RS04090 - hypothetical protein, at 889,019 to 889,654
_RS04090
ABIE51_RS04095: ABIE51_RS04095 - sodium:calcium antiporter, at 889,727 to 890,680
_RS04095
Position (kb) 887
888
889 Strain fitness (log2 ratio) -2
-1
0
1 at 886.727 kb on + strand, within ABIE51_RS04075 at 886.728 kb on - strand, within ABIE51_RS04075 at 886.728 kb on - strand, within ABIE51_RS04075 at 886.739 kb on + strand, within ABIE51_RS04075 at 886.739 kb on + strand, within ABIE51_RS04075 at 886.787 kb on + strand, within ABIE51_RS04075 at 886.787 kb on + strand, within ABIE51_RS04075 at 886.787 kb on + strand, within ABIE51_RS04075 at 886.788 kb on - strand, within ABIE51_RS04075 at 886.788 kb on - strand, within ABIE51_RS04075 at 886.788 kb on - strand, within ABIE51_RS04075 at 886.788 kb on - strand, within ABIE51_RS04075 at 886.847 kb on + strand, within ABIE51_RS04075 at 886.848 kb on - strand, within ABIE51_RS04075 at 886.848 kb on - strand, within ABIE51_RS04075 at 887.099 kb on + strand at 887.099 kb on + strand at 887.099 kb on + strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.150 kb on + strand at 887.150 kb on + strand at 887.151 kb on - strand at 887.151 kb on - strand at 887.170 kb on - strand at 887.373 kb on - strand, within ABIE51_RS04080 at 887.388 kb on - strand, within ABIE51_RS04080 at 887.388 kb on - strand, within ABIE51_RS04080 at 887.413 kb on - strand, within ABIE51_RS04080 at 887.607 kb on + strand at 887.746 kb on + strand at 887.746 kb on + strand at 887.746 kb on + strand at 887.747 kb on - strand at 887.747 kb on - strand at 887.747 kb on - strand at 887.812 kb on + strand, within ABIE51_RS04085 at 887.854 kb on + strand, within ABIE51_RS04085 at 887.855 kb on - strand, within ABIE51_RS04085 at 887.855 kb on - strand, within ABIE51_RS04085 at 887.855 kb on - strand, within ABIE51_RS04085 at 888.026 kb on - strand, within ABIE51_RS04085 at 888.031 kb on + strand, within ABIE51_RS04085 at 888.117 kb on + strand, within ABIE51_RS04085 at 888.223 kb on + strand, within ABIE51_RS04085 at 888.224 kb on - strand, within ABIE51_RS04085 at 888.436 kb on + strand, within ABIE51_RS04085 at 888.436 kb on + strand, within ABIE51_RS04085 at 888.436 kb on + strand, within ABIE51_RS04085 at 888.437 kb on - strand, within ABIE51_RS04085 at 888.437 kb on - strand, within ABIE51_RS04085 at 888.445 kb on + strand, within ABIE51_RS04085 at 888.446 kb on - strand, within ABIE51_RS04085 at 888.446 kb on - strand, within ABIE51_RS04085 at 888.451 kb on + strand, within ABIE51_RS04085 at 888.451 kb on + strand, within ABIE51_RS04085 at 888.452 kb on - strand, within ABIE51_RS04085 at 888.452 kb on - strand, within ABIE51_RS04085 at 888.670 kb on + strand, within ABIE51_RS04085 at 888.671 kb on - strand, within ABIE51_RS04085 at 888.982 kb on + strand at 888.982 kb on + strand at 888.982 kb on + strand at 888.982 kb on + strand at 888.983 kb on - strand at 888.983 kb on - strand at 889.319 kb on + strand, within ABIE51_RS04090 at 889.319 kb on + strand, within ABIE51_RS04090 at 889.319 kb on + strand, within ABIE51_RS04090 at 889.319 kb on + strand, within ABIE51_RS04090 at 889.319 kb on + strand, within ABIE51_RS04090 at 889.320 kb on - strand, within ABIE51_RS04090 at 889.320 kb on - strand, within ABIE51_RS04090 at 889.320 kb on - strand, within ABIE51_RS04090 at 889.320 kb on - strand, within ABIE51_RS04090 at 889.320 kb on - strand, within ABIE51_RS04090 at 889.322 kb on + strand, within ABIE51_RS04090 at 889.322 kb on + strand, within ABIE51_RS04090 at 889.322 kb on + strand, within ABIE51_RS04090 at 889.322 kb on + strand, within ABIE51_RS04090 at 889.323 kb on - strand, within ABIE51_RS04090 at 889.323 kb on - strand, within ABIE51_RS04090 at 889.475 kb on + strand, within ABIE51_RS04090 at 889.476 kb on - strand, within ABIE51_RS04090 at 889.476 kb on - strand, within ABIE51_RS04090 at 889.508 kb on + strand, within ABIE51_RS04090 at 889.508 kb on + strand, within ABIE51_RS04090 at 889.508 kb on + strand, within ABIE51_RS04090 at 889.508 kb on + strand, within ABIE51_RS04090 at 889.509 kb on - strand, within ABIE51_RS04090 at 889.509 kb on - strand, within ABIE51_RS04090 at 889.509 kb on - strand, within ABIE51_RS04090 at 889.509 kb on - strand, within ABIE51_RS04090 at 889.526 kb on + strand, within ABIE51_RS04090 at 889.526 kb on + strand, within ABIE51_RS04090 at 889.526 kb on + strand, within ABIE51_RS04090 at 889.527 kb on - strand, within ABIE51_RS04090 at 889.527 kb on - strand, within ABIE51_RS04090 at 889.634 kb on + strand at 889.668 kb on + strand at 889.691 kb on + strand at 889.691 kb on + strand at 889.692 kb on - strand at 889.692 kb on - strand at 889.740 kb on + strand at 889.741 kb on - strand at 889.741 kb on - strand at 889.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 886,727 + ABIE51_RS04075 0.66 -0.7 886,728 - ABIE51_RS04075 0.66 -0.2 886,728 - ABIE51_RS04075 0.66 -0.6 886,739 + ABIE51_RS04075 0.67 +0.9 886,739 + ABIE51_RS04075 0.67 -0.5 886,787 + ABIE51_RS04075 0.71 -0.4 886,787 + ABIE51_RS04075 0.71 +0.1 886,787 + ABIE51_RS04075 0.71 -0.1 886,788 - ABIE51_RS04075 0.71 -0.3 886,788 - ABIE51_RS04075 0.71 -1.3 886,788 - ABIE51_RS04075 0.71 +0.4 886,788 - ABIE51_RS04075 0.71 +1.5 886,847 + ABIE51_RS04075 0.77 -1.0 886,848 - ABIE51_RS04075 0.77 +0.2 886,848 - ABIE51_RS04075 0.77 +1.1 887,099 + -0.0 887,099 + +1.1 887,099 + +0.4 887,100 - +0.8 887,100 - +0.6 887,100 - +0.5 887,100 - -0.4 887,100 - +0.5 887,100 - -0.6 887,100 - +1.1 887,100 - -0.3 887,100 - -0.2 887,100 - +0.1 887,150 + +0.1 887,150 + +0.6 887,151 - +0.4 887,151 - +0.1 887,170 - -0.1 887,373 - ABIE51_RS04080 0.37 +0.4 887,388 - ABIE51_RS04080 0.41 +0.4 887,388 - ABIE51_RS04080 0.41 +0.3 887,413 - ABIE51_RS04080 0.47 -0.1 887,607 + -0.5 887,746 + -1.3 887,746 + -1.2 887,746 + -1.3 887,747 - -1.2 887,747 - -0.3 887,747 - -0.9 887,812 + ABIE51_RS04085 0.14 -1.2 887,854 + ABIE51_RS04085 0.17 -2.0 887,855 - ABIE51_RS04085 0.17 -1.8 887,855 - ABIE51_RS04085 0.17 -1.7 887,855 - ABIE51_RS04085 0.17 -2.0 888,026 - ABIE51_RS04085 0.30 -2.0 888,031 + ABIE51_RS04085 0.31 -2.0 888,117 + ABIE51_RS04085 0.37 +0.0 888,223 + ABIE51_RS04085 0.45 -1.5 888,224 - ABIE51_RS04085 0.45 +0.3 888,436 + ABIE51_RS04085 0.62 -2.5 888,436 + ABIE51_RS04085 0.62 -0.9 888,436 + ABIE51_RS04085 0.62 -2.3 888,437 - ABIE51_RS04085 0.62 -1.2 888,437 - ABIE51_RS04085 0.62 -2.0 888,445 + ABIE51_RS04085 0.62 -1.1 888,446 - ABIE51_RS04085 0.62 +0.2 888,446 - ABIE51_RS04085 0.62 -1.2 888,451 + ABIE51_RS04085 0.63 -1.0 888,451 + ABIE51_RS04085 0.63 -0.7 888,452 - ABIE51_RS04085 0.63 -0.5 888,452 - ABIE51_RS04085 0.63 -2.0 888,670 + ABIE51_RS04085 0.80 -1.5 888,671 - ABIE51_RS04085 0.80 -1.9 888,982 + +0.4 888,982 + +0.4 888,982 + +0.7 888,982 + +1.0 888,983 - +0.5 888,983 - -0.3 889,319 + ABIE51_RS04090 0.47 +1.1 889,319 + ABIE51_RS04090 0.47 +0.5 889,319 + ABIE51_RS04090 0.47 +0.5 889,319 + ABIE51_RS04090 0.47 +0.6 889,319 + ABIE51_RS04090 0.47 -0.5 889,320 - ABIE51_RS04090 0.47 +0.3 889,320 - ABIE51_RS04090 0.47 -0.0 889,320 - ABIE51_RS04090 0.47 +0.2 889,320 - ABIE51_RS04090 0.47 +0.6 889,320 - ABIE51_RS04090 0.47 +0.3 889,322 + ABIE51_RS04090 0.48 +0.7 889,322 + ABIE51_RS04090 0.48 +0.6 889,322 + ABIE51_RS04090 0.48 -0.4 889,322 + ABIE51_RS04090 0.48 +1.0 889,323 - ABIE51_RS04090 0.48 -0.1 889,323 - ABIE51_RS04090 0.48 +0.5 889,475 + ABIE51_RS04090 0.72 +0.2 889,476 - ABIE51_RS04090 0.72 -0.1 889,476 - ABIE51_RS04090 0.72 -0.1 889,508 + ABIE51_RS04090 0.77 +0.6 889,508 + ABIE51_RS04090 0.77 +0.6 889,508 + ABIE51_RS04090 0.77 +0.8 889,508 + ABIE51_RS04090 0.77 +1.2 889,509 - ABIE51_RS04090 0.77 +0.3 889,509 - ABIE51_RS04090 0.77 +0.3 889,509 - ABIE51_RS04090 0.77 +1.3 889,509 - ABIE51_RS04090 0.77 -0.0 889,526 + ABIE51_RS04090 0.80 +0.4 889,526 + ABIE51_RS04090 0.80 +0.5 889,526 + ABIE51_RS04090 0.80 +0.1 889,527 - ABIE51_RS04090 0.80 +0.2 889,527 - ABIE51_RS04090 0.80 -0.2 889,634 + +0.7 889,668 + +1.3 889,691 + +0.6 889,691 + +0.2 889,692 - +0.7 889,692 - +0.3 889,740 + -1.5 889,741 - +0.0 889,741 - -0.3 889,753 - -0.0
Or see this region's nucleotide sequence