Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03135 and ABIE51_RS03140 overlap by 4 nucleotides ABIE51_RS03140 and ABIE51_RS03145 are separated by 1 nucleotides ABIE51_RS03145 and ABIE51_RS03150 are separated by 197 nucleotides
ABIE51_RS03135: ABIE51_RS03135 - rod shape-determining protein MreC, at 693,981 to 695,117
_RS03135
ABIE51_RS03140: ABIE51_RS03140 - rod shape-determining protein MreD, at 695,114 to 695,599
_RS03140
ABIE51_RS03145: ABIE51_RS03145 - penicillin-binding protein 2, at 695,601 to 697,457
_RS03145
ABIE51_RS03150: ABIE51_RS03150 - rod shape-determining protein RodA, at 697,655 to 698,767
_RS03150
Position (kb) 695
696
697
698 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 694.940 kb on + strand, within ABIE51_RS03135 at 694.940 kb on + strand, within ABIE51_RS03135 at 694.940 kb on + strand, within ABIE51_RS03135 at 694.940 kb on + strand, within ABIE51_RS03135 at 694.941 kb on - strand, within ABIE51_RS03135 at 694.941 kb on - strand, within ABIE51_RS03135 at 694.941 kb on - strand, within ABIE51_RS03135 at 694.941 kb on - strand, within ABIE51_RS03135 at 694.941 kb on - strand, within ABIE51_RS03135 at 695.140 kb on - strand at 695.140 kb on - strand at 695.552 kb on + strand at 695.552 kb on + strand at 695.552 kb on + strand at 695.553 kb on - strand at 695.553 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 694,940 + ABIE51_RS03135 0.84 -0.7 694,940 + ABIE51_RS03135 0.84 -1.0 694,940 + ABIE51_RS03135 0.84 -1.4 694,940 + ABIE51_RS03135 0.84 -1.5 694,941 - ABIE51_RS03135 0.84 -3.3 694,941 - ABIE51_RS03135 0.84 -1.7 694,941 - ABIE51_RS03135 0.84 -2.4 694,941 - ABIE51_RS03135 0.84 -1.3 694,941 - ABIE51_RS03135 0.84 -1.9 695,140 - -1.1 695,140 - -0.3 695,552 + -1.3 695,552 + +0.3 695,552 + -1.0 695,553 - -2.0 695,553 - -2.4
Or see this region's nucleotide sequence