Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00730 and ABIE51_RS00735 are separated by 78 nucleotides ABIE51_RS00735 and ABIE51_RS00740 are separated by 86 nucleotides
ABIE51_RS00730: ABIE51_RS00730 - 5-demethoxyubiquinol-8 5-hydroxylase UbiM, at 152,173 to 153,471
_RS00730
ABIE51_RS00735: ABIE51_RS00735 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 153,550 to 154,887
_RS00735
ABIE51_RS00740: ABIE51_RS00740 - membrane protein insertase YidC, at 154,974 to 156,668
_RS00740
Position (kb) 153
154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 152.661 kb on - strand, within ABIE51_RS00730 at 152.661 kb on - strand, within ABIE51_RS00730 at 153.418 kb on + strand at 153.418 kb on + strand at 153.418 kb on + strand at 153.419 kb on - strand at 153.503 kb on + strand at 153.504 kb on - strand at 153.551 kb on + strand at 153.551 kb on + strand at 153.551 kb on + strand at 153.552 kb on - strand at 153.552 kb on - strand at 153.552 kb on - strand at 153.838 kb on - strand, within ABIE51_RS00735 at 153.838 kb on - strand, within ABIE51_RS00735 at 153.886 kb on + strand, within ABIE51_RS00735 at 153.886 kb on + strand, within ABIE51_RS00735 at 153.886 kb on + strand, within ABIE51_RS00735 at 153.887 kb on - strand, within ABIE51_RS00735 at 153.887 kb on - strand, within ABIE51_RS00735 at 153.887 kb on - strand, within ABIE51_RS00735 at 153.985 kb on + strand, within ABIE51_RS00735 at 153.985 kb on + strand, within ABIE51_RS00735 at 153.985 kb on + strand, within ABIE51_RS00735 at 153.986 kb on - strand, within ABIE51_RS00735 at 153.986 kb on - strand, within ABIE51_RS00735 at 153.986 kb on - strand, within ABIE51_RS00735 at 154.154 kb on + strand, within ABIE51_RS00735 at 154.155 kb on - strand, within ABIE51_RS00735 at 154.668 kb on + strand, within ABIE51_RS00735 at 154.670 kb on + strand, within ABIE51_RS00735 at 154.670 kb on + strand, within ABIE51_RS00735 at 154.670 kb on + strand, within ABIE51_RS00735 at 154.670 kb on + strand, within ABIE51_RS00735 at 154.670 kb on + strand, within ABIE51_RS00735 at 154.671 kb on - strand, within ABIE51_RS00735 at 154.671 kb on - strand, within ABIE51_RS00735 at 154.671 kb on - strand, within ABIE51_RS00735 at 154.671 kb on - strand, within ABIE51_RS00735 at 154.671 kb on - strand, within ABIE51_RS00735 at 154.671 kb on - strand, within ABIE51_RS00735 at 154.671 kb on - strand, within ABIE51_RS00735 at 154.671 kb on - strand, within ABIE51_RS00735 at 154.691 kb on + strand, within ABIE51_RS00735 at 154.691 kb on + strand, within ABIE51_RS00735 at 154.692 kb on - strand, within ABIE51_RS00735 at 154.721 kb on + strand, within ABIE51_RS00735 at 154.721 kb on + strand, within ABIE51_RS00735 at 154.721 kb on + strand, within ABIE51_RS00735 at 154.722 kb on - strand, within ABIE51_RS00735 at 154.722 kb on - strand, within ABIE51_RS00735 at 154.722 kb on - strand, within ABIE51_RS00735 at 154.745 kb on + strand, within ABIE51_RS00735 at 154.745 kb on + strand, within ABIE51_RS00735 at 154.745 kb on + strand, within ABIE51_RS00735 at 154.745 kb on + strand, within ABIE51_RS00735 at 154.745 kb on + strand, within ABIE51_RS00735 at 154.746 kb on - strand, within ABIE51_RS00735 at 154.746 kb on - strand, within ABIE51_RS00735 at 154.746 kb on - strand, within ABIE51_RS00735 at 154.999 kb on + strand at 155.000 kb on - strand at 155.000 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 152,661 - ABIE51_RS00730 0.38 +0.2 152,661 - ABIE51_RS00730 0.38 +0.6 153,418 + -0.3 153,418 + +0.3 153,418 + +0.3 153,419 - +0.1 153,503 + +0.2 153,504 - +1.1 153,551 + +0.5 153,551 + -0.3 153,551 + -0.7 153,552 - +0.5 153,552 - -0.6 153,552 - +1.3 153,838 - ABIE51_RS00735 0.22 +0.4 153,838 - ABIE51_RS00735 0.22 +0.3 153,886 + ABIE51_RS00735 0.25 -0.8 153,886 + ABIE51_RS00735 0.25 -0.2 153,886 + ABIE51_RS00735 0.25 -0.2 153,887 - ABIE51_RS00735 0.25 -0.1 153,887 - ABIE51_RS00735 0.25 -0.2 153,887 - ABIE51_RS00735 0.25 -0.2 153,985 + ABIE51_RS00735 0.33 -1.4 153,985 + ABIE51_RS00735 0.33 +0.8 153,985 + ABIE51_RS00735 0.33 +0.7 153,986 - ABIE51_RS00735 0.33 -0.1 153,986 - ABIE51_RS00735 0.33 -0.2 153,986 - ABIE51_RS00735 0.33 -0.2 154,154 + ABIE51_RS00735 0.45 -1.1 154,155 - ABIE51_RS00735 0.45 +0.4 154,668 + ABIE51_RS00735 0.84 -0.4 154,670 + ABIE51_RS00735 0.84 -0.6 154,670 + ABIE51_RS00735 0.84 -1.1 154,670 + ABIE51_RS00735 0.84 +0.1 154,670 + ABIE51_RS00735 0.84 -0.8 154,670 + ABIE51_RS00735 0.84 -1.3 154,671 - ABIE51_RS00735 0.84 -0.7 154,671 - ABIE51_RS00735 0.84 +0.4 154,671 - ABIE51_RS00735 0.84 -0.4 154,671 - ABIE51_RS00735 0.84 -0.7 154,671 - ABIE51_RS00735 0.84 -0.6 154,671 - ABIE51_RS00735 0.84 -0.7 154,671 - ABIE51_RS00735 0.84 -0.6 154,671 - ABIE51_RS00735 0.84 +1.1 154,691 + ABIE51_RS00735 0.85 -0.8 154,691 + ABIE51_RS00735 0.85 -1.6 154,692 - ABIE51_RS00735 0.85 +0.1 154,721 + ABIE51_RS00735 0.88 -1.0 154,721 + ABIE51_RS00735 0.88 -1.2 154,721 + ABIE51_RS00735 0.88 -0.6 154,722 - ABIE51_RS00735 0.88 +0.2 154,722 - ABIE51_RS00735 0.88 +0.1 154,722 - ABIE51_RS00735 0.88 +0.4 154,745 + ABIE51_RS00735 0.89 -0.6 154,745 + ABIE51_RS00735 0.89 -0.8 154,745 + ABIE51_RS00735 0.89 -3.0 154,745 + ABIE51_RS00735 0.89 -2.1 154,745 + ABIE51_RS00735 0.89 -1.5 154,746 - ABIE51_RS00735 0.89 +0.2 154,746 - ABIE51_RS00735 0.89 +0.1 154,746 - ABIE51_RS00735 0.89 -0.7 154,999 + +0.4 155,000 - +0.2 155,000 - +0.2
Or see this region's nucleotide sequence