Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04980 and ABIE51_RS04985 overlap by 4 nucleotides ABIE51_RS04985 and ABIE51_RS04990 are separated by 3 nucleotides ABIE51_RS04990 and ABIE51_RS04995 are separated by 10 nucleotides
ABIE51_RS04980: ABIE51_RS04980 - histidine phosphatase family protein, at 1,080,316 to 1,080,864
_RS04980
ABIE51_RS04985: ABIE51_RS04985 - adenosylcobinamide-GDP ribazoletransferase, at 1,080,861 to 1,081,610
_RS04985
ABIE51_RS04990: ABIE51_RS04990 - YceH family protein, at 1,081,614 to 1,082,261
_RS04990
ABIE51_RS04995: ABIE51_RS04995 - YbaL family putative K(+) efflux transporter, at 1,082,272 to 1,083,957
_RS04995
Position (kb) 1081
1082
1083 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1081.344 kb on + strand, within ABIE51_RS04985 at 1081.344 kb on + strand, within ABIE51_RS04985 at 1081.344 kb on + strand, within ABIE51_RS04985 at 1081.529 kb on + strand, within ABIE51_RS04985 at 1081.530 kb on - strand, within ABIE51_RS04985 at 1081.538 kb on + strand at 1081.925 kb on - strand, within ABIE51_RS04990 at 1082.014 kb on + strand, within ABIE51_RS04990 at 1082.741 kb on + strand, within ABIE51_RS04995 at 1082.741 kb on + strand, within ABIE51_RS04995 at 1082.742 kb on - strand, within ABIE51_RS04995
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 1,081,344 + ABIE51_RS04985 0.64 -0.1 1,081,344 + ABIE51_RS04985 0.64 +0.4 1,081,344 + ABIE51_RS04985 0.64 +0.5 1,081,529 + ABIE51_RS04985 0.89 +0.1 1,081,530 - ABIE51_RS04985 0.89 +0.1 1,081,538 + -0.2 1,081,925 - ABIE51_RS04990 0.48 -1.3 1,082,014 + ABIE51_RS04990 0.62 -2.0 1,082,741 + ABIE51_RS04995 0.28 -0.1 1,082,741 + ABIE51_RS04995 0.28 -1.9 1,082,742 - ABIE51_RS04995 0.28 -2.9
Or see this region's nucleotide sequence