Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS04775

Experiment: Ying_OrganicAcid7 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS04770 and ABIE51_RS04775 are separated by 304 nucleotidesABIE51_RS04775 and ABIE51_RS04780 are separated by 220 nucleotidesABIE51_RS04780 and ABIE51_RS04785 overlap by 2 nucleotides ABIE51_RS04770: ABIE51_RS04770 - cell division protein FtsZ, at 1,031,183 to 1,032,407 _RS04770 ABIE51_RS04775: ABIE51_RS04775 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 1,032,712 to 1,033,626 _RS04775 ABIE51_RS04780: ABIE51_RS04780 - DUF721 domain-containing protein, at 1,033,847 to 1,034,302 _RS04780 ABIE51_RS04785: ABIE51_RS04785 - M23 family metallopeptidase, at 1,034,301 to 1,035,224 _RS04785 Position (kb) 1032 1033 1034Strain fitness (log2 ratio) -2 -1 0 1at 1032.618 kb on + strandat 1032.618 kb on + strandat 1032.618 kb on + strandat 1032.618 kb on + strandat 1032.619 kb on - strandat 1032.619 kb on - strandat 1032.619 kb on - strandat 1032.619 kb on - strandat 1032.676 kb on + strandat 1032.676 kb on + strandat 1032.676 kb on + strandat 1032.676 kb on + strandat 1033.603 kb on + strandat 1033.604 kb on - strandat 1033.604 kb on - strandat 1033.604 kb on - strandat 1033.604 kb on - strandat 1033.725 kb on + strandat 1033.731 kb on + strandat 1033.775 kb on + strandat 1033.783 kb on + strandat 1033.783 kb on + strandat 1033.783 kb on + strandat 1033.784 kb on - strandat 1033.784 kb on - strandat 1033.784 kb on - strandat 1033.805 kb on + strandat 1033.806 kb on - strandat 1033.916 kb on + strand, within ABIE51_RS04780at 1033.917 kb on - strand, within ABIE51_RS04780at 1033.917 kb on - strand, within ABIE51_RS04780at 1033.917 kb on - strand, within ABIE51_RS04780at 1033.917 kb on - strand, within ABIE51_RS04780at 1033.917 kb on - strand, within ABIE51_RS04780at 1034.307 kb on + strandat 1034.307 kb on + strandat 1034.308 kb on - strandat 1034.308 kb on - strandat 1034.308 kb on - strandat 1034.308 kb on - strandat 1034.308 kb on - strandat 1034.308 kb on - strandat 1034.308 kb on - strandat 1034.321 kb on - strandat 1034.367 kb on + strandat 1034.367 kb on + strandat 1034.368 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2
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1,032,618 + -0.1
1,032,618 + +1.2
1,032,618 + +0.2
1,032,618 + +1.1
1,032,619 - +0.2
1,032,619 - +1.1
1,032,619 - +0.5
1,032,619 - +0.6
1,032,676 + -0.1
1,032,676 + +0.1
1,032,676 + -0.3
1,032,676 + -0.1
1,033,603 + -0.3
1,033,604 - +0.6
1,033,604 - +0.6
1,033,604 - +0.2
1,033,604 - +0.0
1,033,725 + +0.4
1,033,731 + -0.5
1,033,775 + -1.5
1,033,783 + +1.1
1,033,783 + +0.1
1,033,783 + +1.2
1,033,784 - -0.6
1,033,784 - -0.3
1,033,784 - -1.0
1,033,805 + +0.4
1,033,806 - +1.1
1,033,916 + ABIE51_RS04780 0.15 -0.2
1,033,917 - ABIE51_RS04780 0.15 -1.9
1,033,917 - ABIE51_RS04780 0.15 -1.0
1,033,917 - ABIE51_RS04780 0.15 -0.8
1,033,917 - ABIE51_RS04780 0.15 -0.5
1,033,917 - ABIE51_RS04780 0.15 -0.5
1,034,307 + +0.2
1,034,307 + -1.1
1,034,308 - -0.8
1,034,308 - -0.6
1,034,308 - +0.1
1,034,308 - -1.2
1,034,308 - -0.7
1,034,308 - +1.1
1,034,308 - -0.9
1,034,321 - -1.4
1,034,367 + +0.2
1,034,367 + +0.3
1,034,368 - -1.2

Or see this region's nucleotide sequence