Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04770 and ABIE51_RS04775 are separated by 304 nucleotides ABIE51_RS04775 and ABIE51_RS04780 are separated by 220 nucleotides ABIE51_RS04780 and ABIE51_RS04785 overlap by 2 nucleotides
ABIE51_RS04770: ABIE51_RS04770 - cell division protein FtsZ, at 1,031,183 to 1,032,407
_RS04770
ABIE51_RS04775: ABIE51_RS04775 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 1,032,712 to 1,033,626
_RS04775
ABIE51_RS04780: ABIE51_RS04780 - DUF721 domain-containing protein, at 1,033,847 to 1,034,302
_RS04780
ABIE51_RS04785: ABIE51_RS04785 - M23 family metallopeptidase, at 1,034,301 to 1,035,224
_RS04785
Position (kb)
1032
1033
1034 Strain fitness (log2 ratio)
-2
-1
0
1 at 1032.618 kb on + strand at 1032.618 kb on + strand at 1032.618 kb on + strand at 1032.618 kb on + strand at 1032.619 kb on - strand at 1032.619 kb on - strand at 1032.619 kb on - strand at 1032.619 kb on - strand at 1032.676 kb on + strand at 1032.676 kb on + strand at 1032.676 kb on + strand at 1032.676 kb on + strand at 1033.603 kb on + strand at 1033.604 kb on - strand at 1033.604 kb on - strand at 1033.604 kb on - strand at 1033.604 kb on - strand at 1033.725 kb on + strand at 1033.731 kb on + strand at 1033.775 kb on + strand at 1033.783 kb on + strand at 1033.783 kb on + strand at 1033.783 kb on + strand at 1033.784 kb on - strand at 1033.784 kb on - strand at 1033.784 kb on - strand at 1033.805 kb on + strand at 1033.806 kb on - strand at 1033.916 kb on + strand, within ABIE51_RS04780 at 1033.917 kb on - strand, within ABIE51_RS04780 at 1033.917 kb on - strand, within ABIE51_RS04780 at 1033.917 kb on - strand, within ABIE51_RS04780 at 1033.917 kb on - strand, within ABIE51_RS04780 at 1033.917 kb on - strand, within ABIE51_RS04780 at 1034.307 kb on + strand at 1034.307 kb on + strand at 1034.308 kb on - strand at 1034.308 kb on - strand at 1034.308 kb on - strand at 1034.308 kb on - strand at 1034.308 kb on - strand at 1034.308 kb on - strand at 1034.308 kb on - strand at 1034.321 kb on - strand at 1034.367 kb on + strand at 1034.367 kb on + strand at 1034.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 1,032,618 + -0.1 1,032,618 + +1.2 1,032,618 + +0.2 1,032,618 + +1.1 1,032,619 - +0.2 1,032,619 - +1.1 1,032,619 - +0.5 1,032,619 - +0.6 1,032,676 + -0.1 1,032,676 + +0.1 1,032,676 + -0.3 1,032,676 + -0.1 1,033,603 + -0.3 1,033,604 - +0.6 1,033,604 - +0.6 1,033,604 - +0.2 1,033,604 - +0.0 1,033,725 + +0.4 1,033,731 + -0.5 1,033,775 + -1.5 1,033,783 + +1.1 1,033,783 + +0.1 1,033,783 + +1.2 1,033,784 - -0.6 1,033,784 - -0.3 1,033,784 - -1.0 1,033,805 + +0.4 1,033,806 - +1.1 1,033,916 + ABIE51_RS04780 0.15 -0.2 1,033,917 - ABIE51_RS04780 0.15 -1.9 1,033,917 - ABIE51_RS04780 0.15 -1.0 1,033,917 - ABIE51_RS04780 0.15 -0.8 1,033,917 - ABIE51_RS04780 0.15 -0.5 1,033,917 - ABIE51_RS04780 0.15 -0.5 1,034,307 + +0.2 1,034,307 + -1.1 1,034,308 - -0.8 1,034,308 - -0.6 1,034,308 - +0.1 1,034,308 - -1.2 1,034,308 - -0.7 1,034,308 - +1.1 1,034,308 - -0.9 1,034,321 - -1.4 1,034,367 + +0.2 1,034,367 + +0.3 1,034,368 - -1.2
Or see this region's nucleotide sequence