Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04520 and ABIE51_RS04525 are separated by 54 nucleotides ABIE51_RS04525 and ABIE51_RS04530 are separated by 84 nucleotides ABIE51_RS04530 and ABIE51_RS04535 are separated by 368 nucleotides ABIE51_RS04535 and ABIE51_RS04540 are separated by 19 nucleotides
ABIE51_RS04520: ABIE51_RS04520 - type II secretion system ATPase GspE, at 978,898 to 980,610
_RS04520
ABIE51_RS04525: ABIE51_RS04525 - GIY-YIG nuclease family protein, at 980,665 to 981,030
_RS04525
ABIE51_RS04530: ABIE51_RS04530 - type II secretion system F family protein, at 981,115 to 982,332
_RS04530
ABIE51_RS04535: ABIE51_RS04535 - type II secretion system major pseudopilin GspG, at 982,701 to 983,135
_RS04535
ABIE51_RS04540: ABIE51_RS04540 - GspH/FimT family pseudopilin, at 983,155 to 983,607
_RS04540
Position (kb) 981
982
983 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 980.221 kb on + strand, within ABIE51_RS04520 at 980.221 kb on + strand, within ABIE51_RS04520 at 980.221 kb on + strand, within ABIE51_RS04520 at 980.222 kb on - strand, within ABIE51_RS04520 at 980.299 kb on + strand, within ABIE51_RS04520 at 980.344 kb on + strand, within ABIE51_RS04520 at 980.371 kb on + strand, within ABIE51_RS04520 at 980.408 kb on - strand, within ABIE51_RS04520 at 980.533 kb on + strand at 980.533 kb on + strand at 980.534 kb on - strand at 980.534 kb on - strand at 980.596 kb on - strand at 980.619 kb on + strand at 980.619 kb on + strand at 980.619 kb on + strand at 980.620 kb on - strand at 980.672 kb on + strand at 980.672 kb on + strand at 980.672 kb on + strand at 980.713 kb on + strand, within ABIE51_RS04525 at 980.713 kb on + strand, within ABIE51_RS04525 at 980.713 kb on + strand, within ABIE51_RS04525 at 980.747 kb on - strand, within ABIE51_RS04525 at 980.747 kb on - strand, within ABIE51_RS04525 at 980.747 kb on - strand, within ABIE51_RS04525 at 980.747 kb on - strand, within ABIE51_RS04525 at 980.824 kb on + strand, within ABIE51_RS04525 at 980.825 kb on - strand, within ABIE51_RS04525 at 980.825 kb on - strand, within ABIE51_RS04525 at 980.982 kb on + strand, within ABIE51_RS04525 at 981.045 kb on + strand at 981.045 kb on + strand at 981.045 kb on + strand at 981.045 kb on + strand at 981.046 kb on - strand at 981.124 kb on + strand at 981.124 kb on + strand at 981.124 kb on + strand at 981.125 kb on - strand at 981.125 kb on - strand at 981.131 kb on - strand at 981.495 kb on + strand, within ABIE51_RS04530 at 981.495 kb on + strand, within ABIE51_RS04530 at 981.496 kb on - strand, within ABIE51_RS04530 at 981.496 kb on - strand, within ABIE51_RS04530 at 981.496 kb on - strand, within ABIE51_RS04530 at 981.511 kb on + strand, within ABIE51_RS04530 at 981.511 kb on + strand, within ABIE51_RS04530 at 981.512 kb on - strand, within ABIE51_RS04530 at 981.512 kb on - strand, within ABIE51_RS04530 at 981.580 kb on + strand, within ABIE51_RS04530 at 981.581 kb on - strand, within ABIE51_RS04530 at 981.631 kb on + strand, within ABIE51_RS04530 at 981.632 kb on - strand, within ABIE51_RS04530 at 981.685 kb on + strand, within ABIE51_RS04530 at 981.712 kb on + strand, within ABIE51_RS04530 at 982.106 kb on - strand, within ABIE51_RS04530 at 982.306 kb on + strand at 982.306 kb on + strand at 982.535 kb on + strand at 982.535 kb on + strand at 982.536 kb on - strand at 982.851 kb on + strand, within ABIE51_RS04535 at 982.851 kb on + strand, within ABIE51_RS04535 at 982.851 kb on + strand, within ABIE51_RS04535 at 982.852 kb on - strand, within ABIE51_RS04535 at 982.852 kb on - strand, within ABIE51_RS04535 at 982.987 kb on - strand, within ABIE51_RS04535 at 983.128 kb on - strand at 983.128 kb on - strand at 983.134 kb on - strand at 983.134 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 980,221 + ABIE51_RS04520 0.77 -1.9 980,221 + ABIE51_RS04520 0.77 -0.3 980,221 + ABIE51_RS04520 0.77 +0.6 980,222 - ABIE51_RS04520 0.77 -2.3 980,299 + ABIE51_RS04520 0.82 -1.7 980,344 + ABIE51_RS04520 0.84 -2.3 980,371 + ABIE51_RS04520 0.86 -2.2 980,408 - ABIE51_RS04520 0.88 -1.7 980,533 + -2.4 980,533 + -0.9 980,534 - -1.6 980,534 - -1.9 980,596 - +2.4 980,619 + -0.3 980,619 + -0.9 980,619 + +0.3 980,620 - +0.0 980,672 + -0.1 980,672 + -0.3 980,672 + +0.2 980,713 + ABIE51_RS04525 0.13 -0.1 980,713 + ABIE51_RS04525 0.13 +0.8 980,713 + ABIE51_RS04525 0.13 +0.3 980,747 - ABIE51_RS04525 0.22 -0.7 980,747 - ABIE51_RS04525 0.22 -0.1 980,747 - ABIE51_RS04525 0.22 +0.1 980,747 - ABIE51_RS04525 0.22 +0.4 980,824 + ABIE51_RS04525 0.43 +0.7 980,825 - ABIE51_RS04525 0.44 +0.2 980,825 - ABIE51_RS04525 0.44 +0.6 980,982 + ABIE51_RS04525 0.87 +1.4 981,045 + +0.3 981,045 + -0.5 981,045 + +0.7 981,045 + +0.6 981,046 - +0.1 981,124 + -2.9 981,124 + -2.1 981,124 + -1.1 981,125 - -0.7 981,125 - -1.4 981,131 - -1.6 981,495 + ABIE51_RS04530 0.31 -0.6 981,495 + ABIE51_RS04530 0.31 -0.9 981,496 - ABIE51_RS04530 0.31 -2.4 981,496 - ABIE51_RS04530 0.31 -1.3 981,496 - ABIE51_RS04530 0.31 -1.6 981,511 + ABIE51_RS04530 0.33 -0.6 981,511 + ABIE51_RS04530 0.33 -2.4 981,512 - ABIE51_RS04530 0.33 -2.0 981,512 - ABIE51_RS04530 0.33 -2.0 981,580 + ABIE51_RS04530 0.38 -0.6 981,581 - ABIE51_RS04530 0.38 -1.1 981,631 + ABIE51_RS04530 0.42 -1.0 981,632 - ABIE51_RS04530 0.42 -1.7 981,685 + ABIE51_RS04530 0.47 -4.7 981,712 + ABIE51_RS04530 0.49 -2.2 982,106 - ABIE51_RS04530 0.81 -1.9 982,306 + -1.4 982,306 + -2.3 982,535 + +0.7 982,535 + -0.2 982,536 - +1.5 982,851 + ABIE51_RS04535 0.34 -2.9 982,851 + ABIE51_RS04535 0.34 -2.1 982,851 + ABIE51_RS04535 0.34 -2.3 982,852 - ABIE51_RS04535 0.35 -1.4 982,852 - ABIE51_RS04535 0.35 -1.9 982,987 - ABIE51_RS04535 0.66 -2.3 983,128 - -0.6 983,128 - -0.9 983,134 - -1.4 983,134 - -1.4
Or see this region's nucleotide sequence