Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04510 and ABIE51_RS04515 are separated by 68 nucleotides ABIE51_RS04515 and ABIE51_RS04520 are separated by 161 nucleotides ABIE51_RS04520 and ABIE51_RS04525 are separated by 54 nucleotides ABIE51_RS04525 and ABIE51_RS04530 are separated by 84 nucleotides
ABIE51_RS04510: ABIE51_RS04510 - YadA-like family protein, at 975,915 to 978,134
_RS04510
ABIE51_RS04515: ABIE51_RS04515 - hypothetical protein, at 978,203 to 978,736
_RS04515
ABIE51_RS04520: ABIE51_RS04520 - type II secretion system ATPase GspE, at 978,898 to 980,610
_RS04520
ABIE51_RS04525: ABIE51_RS04525 - GIY-YIG nuclease family protein, at 980,665 to 981,030
_RS04525
ABIE51_RS04530: ABIE51_RS04530 - type II secretion system F family protein, at 981,115 to 982,332
_RS04530
Position (kb) 978
979
980
981 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 978.036 kb on + strand at 978.132 kb on + strand at 978.229 kb on - strand at 978.229 kb on - strand at 978.331 kb on - strand, within ABIE51_RS04515 at 978.352 kb on - strand, within ABIE51_RS04515 at 978.384 kb on + strand, within ABIE51_RS04515 at 978.432 kb on + strand, within ABIE51_RS04515 at 978.433 kb on - strand, within ABIE51_RS04515 at 978.433 kb on - strand, within ABIE51_RS04515 at 978.528 kb on + strand, within ABIE51_RS04515 at 978.529 kb on - strand, within ABIE51_RS04515 at 978.529 kb on - strand, within ABIE51_RS04515 at 978.529 kb on - strand, within ABIE51_RS04515 at 978.529 kb on - strand, within ABIE51_RS04515 at 978.529 kb on - strand, within ABIE51_RS04515 at 978.529 kb on - strand, within ABIE51_RS04515 at 978.531 kb on + strand, within ABIE51_RS04515 at 978.531 kb on + strand, within ABIE51_RS04515 at 978.531 kb on + strand, within ABIE51_RS04515 at 978.532 kb on - strand, within ABIE51_RS04515 at 978.633 kb on + strand, within ABIE51_RS04515 at 978.633 kb on + strand, within ABIE51_RS04515 at 978.634 kb on - strand, within ABIE51_RS04515 at 978.634 kb on - strand, within ABIE51_RS04515 at 978.672 kb on + strand, within ABIE51_RS04515 at 978.673 kb on - strand, within ABIE51_RS04515 at 978.766 kb on + strand at 978.766 kb on + strand at 978.767 kb on - strand at 978.867 kb on + strand at 978.868 kb on - strand at 979.250 kb on - strand, within ABIE51_RS04520 at 979.250 kb on - strand, within ABIE51_RS04520 at 979.250 kb on - strand, within ABIE51_RS04520 at 979.343 kb on - strand, within ABIE51_RS04520 at 979.754 kb on + strand, within ABIE51_RS04520 at 979.754 kb on + strand, within ABIE51_RS04520 at 979.754 kb on + strand, within ABIE51_RS04520 at 979.754 kb on + strand, within ABIE51_RS04520 at 979.754 kb on + strand, within ABIE51_RS04520 at 979.755 kb on - strand, within ABIE51_RS04520 at 979.912 kb on + strand, within ABIE51_RS04520 at 979.912 kb on + strand, within ABIE51_RS04520 at 979.913 kb on - strand, within ABIE51_RS04520 at 980.221 kb on + strand, within ABIE51_RS04520 at 980.221 kb on + strand, within ABIE51_RS04520 at 980.221 kb on + strand, within ABIE51_RS04520 at 980.222 kb on - strand, within ABIE51_RS04520 at 980.299 kb on + strand, within ABIE51_RS04520 at 980.344 kb on + strand, within ABIE51_RS04520 at 980.371 kb on + strand, within ABIE51_RS04520 at 980.408 kb on - strand, within ABIE51_RS04520 at 980.533 kb on + strand at 980.533 kb on + strand at 980.534 kb on - strand at 980.534 kb on - strand at 980.596 kb on - strand at 980.619 kb on + strand at 980.619 kb on + strand at 980.619 kb on + strand at 980.620 kb on - strand at 980.672 kb on + strand at 980.672 kb on + strand at 980.672 kb on + strand at 980.713 kb on + strand, within ABIE51_RS04525 at 980.713 kb on + strand, within ABIE51_RS04525 at 980.713 kb on + strand, within ABIE51_RS04525 at 980.747 kb on - strand, within ABIE51_RS04525 at 980.747 kb on - strand, within ABIE51_RS04525 at 980.747 kb on - strand, within ABIE51_RS04525 at 980.747 kb on - strand, within ABIE51_RS04525 at 980.824 kb on + strand, within ABIE51_RS04525 at 980.825 kb on - strand, within ABIE51_RS04525 at 980.825 kb on - strand, within ABIE51_RS04525 at 980.982 kb on + strand, within ABIE51_RS04525 at 981.045 kb on + strand at 981.045 kb on + strand at 981.045 kb on + strand at 981.045 kb on + strand at 981.046 kb on - strand at 981.124 kb on + strand at 981.124 kb on + strand at 981.124 kb on + strand at 981.125 kb on - strand at 981.125 kb on - strand at 981.131 kb on - strand at 981.495 kb on + strand, within ABIE51_RS04530 at 981.495 kb on + strand, within ABIE51_RS04530 at 981.496 kb on - strand, within ABIE51_RS04530 at 981.496 kb on - strand, within ABIE51_RS04530 at 981.496 kb on - strand, within ABIE51_RS04530 at 981.511 kb on + strand, within ABIE51_RS04530 at 981.511 kb on + strand, within ABIE51_RS04530 at 981.512 kb on - strand, within ABIE51_RS04530 at 981.512 kb on - strand, within ABIE51_RS04530 at 981.580 kb on + strand, within ABIE51_RS04530 at 981.581 kb on - strand, within ABIE51_RS04530
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 978,036 + +0.1 978,132 + +0.6 978,229 - -1.0 978,229 - -0.2 978,331 - ABIE51_RS04515 0.24 +0.2 978,352 - ABIE51_RS04515 0.28 -0.2 978,384 + ABIE51_RS04515 0.34 -0.6 978,432 + ABIE51_RS04515 0.43 -0.6 978,433 - ABIE51_RS04515 0.43 +0.3 978,433 - ABIE51_RS04515 0.43 +0.8 978,528 + ABIE51_RS04515 0.61 -0.1 978,529 - ABIE51_RS04515 0.61 +0.6 978,529 - ABIE51_RS04515 0.61 -0.4 978,529 - ABIE51_RS04515 0.61 +0.0 978,529 - ABIE51_RS04515 0.61 +0.1 978,529 - ABIE51_RS04515 0.61 -0.2 978,529 - ABIE51_RS04515 0.61 +0.3 978,531 + ABIE51_RS04515 0.61 -0.0 978,531 + ABIE51_RS04515 0.61 +0.3 978,531 + ABIE51_RS04515 0.61 -0.3 978,532 - ABIE51_RS04515 0.62 +0.3 978,633 + ABIE51_RS04515 0.81 +0.5 978,633 + ABIE51_RS04515 0.81 +0.4 978,634 - ABIE51_RS04515 0.81 -0.5 978,634 - ABIE51_RS04515 0.81 +2.0 978,672 + ABIE51_RS04515 0.88 +0.1 978,673 - ABIE51_RS04515 0.88 +0.4 978,766 + +0.3 978,766 + +0.5 978,767 - -0.3 978,867 + +0.3 978,868 - -0.1 979,250 - ABIE51_RS04520 0.21 -1.6 979,250 - ABIE51_RS04520 0.21 -2.1 979,250 - ABIE51_RS04520 0.21 -2.2 979,343 - ABIE51_RS04520 0.26 -1.4 979,754 + ABIE51_RS04520 0.50 -2.7 979,754 + ABIE51_RS04520 0.50 -2.5 979,754 + ABIE51_RS04520 0.50 -1.5 979,754 + ABIE51_RS04520 0.50 -0.2 979,754 + ABIE51_RS04520 0.50 -1.3 979,755 - ABIE51_RS04520 0.50 -0.9 979,912 + ABIE51_RS04520 0.59 -2.9 979,912 + ABIE51_RS04520 0.59 -4.1 979,913 - ABIE51_RS04520 0.59 -2.5 980,221 + ABIE51_RS04520 0.77 -1.9 980,221 + ABIE51_RS04520 0.77 -0.3 980,221 + ABIE51_RS04520 0.77 +0.6 980,222 - ABIE51_RS04520 0.77 -2.3 980,299 + ABIE51_RS04520 0.82 -1.7 980,344 + ABIE51_RS04520 0.84 -2.3 980,371 + ABIE51_RS04520 0.86 -2.2 980,408 - ABIE51_RS04520 0.88 -1.7 980,533 + -2.4 980,533 + -0.9 980,534 - -1.6 980,534 - -1.9 980,596 - +2.4 980,619 + -0.3 980,619 + -0.9 980,619 + +0.3 980,620 - +0.0 980,672 + -0.1 980,672 + -0.3 980,672 + +0.2 980,713 + ABIE51_RS04525 0.13 -0.1 980,713 + ABIE51_RS04525 0.13 +0.8 980,713 + ABIE51_RS04525 0.13 +0.3 980,747 - ABIE51_RS04525 0.22 -0.7 980,747 - ABIE51_RS04525 0.22 -0.1 980,747 - ABIE51_RS04525 0.22 +0.1 980,747 - ABIE51_RS04525 0.22 +0.4 980,824 + ABIE51_RS04525 0.43 +0.7 980,825 - ABIE51_RS04525 0.44 +0.2 980,825 - ABIE51_RS04525 0.44 +0.6 980,982 + ABIE51_RS04525 0.87 +1.4 981,045 + +0.3 981,045 + -0.5 981,045 + +0.7 981,045 + +0.6 981,046 - +0.1 981,124 + -2.9 981,124 + -2.1 981,124 + -1.1 981,125 - -0.7 981,125 - -1.4 981,131 - -1.6 981,495 + ABIE51_RS04530 0.31 -0.6 981,495 + ABIE51_RS04530 0.31 -0.9 981,496 - ABIE51_RS04530 0.31 -2.4 981,496 - ABIE51_RS04530 0.31 -1.3 981,496 - ABIE51_RS04530 0.31 -1.6 981,511 + ABIE51_RS04530 0.33 -0.6 981,511 + ABIE51_RS04530 0.33 -2.4 981,512 - ABIE51_RS04530 0.33 -2.0 981,512 - ABIE51_RS04530 0.33 -2.0 981,580 + ABIE51_RS04530 0.38 -0.6 981,581 - ABIE51_RS04530 0.38 -1.1
Or see this region's nucleotide sequence