Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04180 and ABIE51_RS04185 overlap by 1 nucleotides ABIE51_RS04185 and ABIE51_RS04190 overlap by 4 nucleotides ABIE51_RS04190 and ABIE51_RS04195 overlap by 4 nucleotides ABIE51_RS04195 and ABIE51_RS04200 are separated by 12 nucleotides
ABIE51_RS04180: ABIE51_RS04180 - anthranilate phosphoribosyltransferase, at 905,208 to 906,254
_RS04180
ABIE51_RS04185: ABIE51_RS04185 - antibiotic biosynthesis monooxygenase, at 906,254 to 906,610
_RS04185
ABIE51_RS04190: ABIE51_RS04190 - indole-3-glycerol phosphate synthase TrpC, at 906,607 to 907,398
_RS04190
ABIE51_RS04195: ABIE51_RS04195 - haloacid dehalogenase-like hydrolase, at 907,395 to 908,183
_RS04195
ABIE51_RS04200: ABIE51_RS04200 - zf-TFIIB domain-containing protein, at 908,196 to 908,567
_RS04200
Position (kb) 906
907
908 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 905.830 kb on + strand, within ABIE51_RS04180 at 905.955 kb on + strand, within ABIE51_RS04180 at 905.955 kb on + strand, within ABIE51_RS04180 at 905.955 kb on + strand, within ABIE51_RS04180 at 906.114 kb on + strand, within ABIE51_RS04180 at 906.115 kb on - strand, within ABIE51_RS04180 at 906.115 kb on - strand, within ABIE51_RS04180 at 906.151 kb on + strand at 906.151 kb on + strand at 906.151 kb on + strand at 906.151 kb on + strand at 906.152 kb on - strand at 906.152 kb on - strand at 906.152 kb on - strand at 906.291 kb on - strand, within ABIE51_RS04185 at 906.293 kb on + strand, within ABIE51_RS04185 at 906.437 kb on - strand, within ABIE51_RS04185 at 906.446 kb on + strand, within ABIE51_RS04185 at 906.447 kb on - strand, within ABIE51_RS04185 at 906.531 kb on - strand, within ABIE51_RS04185 at 906.539 kb on + strand, within ABIE51_RS04185 at 906.539 kb on + strand, within ABIE51_RS04185 at 906.853 kb on + strand, within ABIE51_RS04190 at 906.853 kb on + strand, within ABIE51_RS04190 at 906.854 kb on - strand, within ABIE51_RS04190 at 906.922 kb on + strand, within ABIE51_RS04190 at 906.988 kb on + strand, within ABIE51_RS04190 at 906.997 kb on + strand, within ABIE51_RS04190 at 908.398 kb on + strand, within ABIE51_RS04200 at 908.398 kb on + strand, within ABIE51_RS04200 at 908.398 kb on + strand, within ABIE51_RS04200 at 908.398 kb on + strand, within ABIE51_RS04200 at 908.398 kb on + strand, within ABIE51_RS04200
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 905,830 + ABIE51_RS04180 0.59 +0.4 905,955 + ABIE51_RS04180 0.71 -1.6 905,955 + ABIE51_RS04180 0.71 -3.5 905,955 + ABIE51_RS04180 0.71 -1.9 906,114 + ABIE51_RS04180 0.87 -4.3 906,115 - ABIE51_RS04180 0.87 -2.9 906,115 - ABIE51_RS04180 0.87 -2.1 906,151 + -0.7 906,151 + -3.6 906,151 + -3.1 906,151 + -1.9 906,152 - -2.4 906,152 - -3.6 906,152 - -2.4 906,291 - ABIE51_RS04185 0.10 -0.7 906,293 + ABIE51_RS04185 0.11 +0.9 906,437 - ABIE51_RS04185 0.51 -0.1 906,446 + ABIE51_RS04185 0.54 +0.1 906,447 - ABIE51_RS04185 0.54 +0.4 906,531 - ABIE51_RS04185 0.78 +0.5 906,539 + ABIE51_RS04185 0.80 +0.2 906,539 + ABIE51_RS04185 0.80 +0.0 906,853 + ABIE51_RS04190 0.31 -2.1 906,853 + ABIE51_RS04190 0.31 -2.2 906,854 - ABIE51_RS04190 0.31 -1.9 906,922 + ABIE51_RS04190 0.40 -2.8 906,988 + ABIE51_RS04190 0.48 -2.2 906,997 + ABIE51_RS04190 0.49 -0.2 908,398 + ABIE51_RS04200 0.54 +0.1 908,398 + ABIE51_RS04200 0.54 -0.7 908,398 + ABIE51_RS04200 0.54 -0.0 908,398 + ABIE51_RS04200 0.54 +0.4 908,398 + ABIE51_RS04200 0.54 -0.3
Or see this region's nucleotide sequence