Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02290 and ABIE51_RS02295 overlap by 14 nucleotides ABIE51_RS02295 and ABIE51_RS02300 are separated by 38 nucleotides ABIE51_RS02300 and ABIE51_RS02305 are separated by 93 nucleotides ABIE51_RS02305 and ABIE51_RS02310 are separated by 74 nucleotides
ABIE51_RS02290: ABIE51_RS02290 - PH domain-containing protein, at 514,294 to 515,799
_RS02290
ABIE51_RS02295: ABIE51_RS02295 - PH domain-containing protein, at 515,786 to 516,292
_RS02295
ABIE51_RS02300: ABIE51_RS02300 - lauroyl acyltransferase, at 516,331 to 517,263
_RS02300
ABIE51_RS02305: ABIE51_RS02305 - D-aminoacyl-tRNA deacylase, at 517,357 to 517,797
_RS02305
ABIE51_RS02310: ABIE51_RS02310 - RNA polymerase sigma factor RpoD, at 517,872 to 519,731
_RS02310
Position (kb) 516
517
518 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 515.565 kb on - strand, within ABIE51_RS02290 at 515.565 kb on - strand, within ABIE51_RS02290 at 515.571 kb on - strand, within ABIE51_RS02290 at 515.571 kb on - strand, within ABIE51_RS02290 at 515.571 kb on - strand, within ABIE51_RS02290 at 515.571 kb on - strand, within ABIE51_RS02290 at 515.571 kb on - strand, within ABIE51_RS02290 at 515.579 kb on + strand, within ABIE51_RS02290 at 515.579 kb on + strand, within ABIE51_RS02290 at 515.580 kb on - strand, within ABIE51_RS02290 at 515.580 kb on - strand, within ABIE51_RS02290 at 516.066 kb on + strand, within ABIE51_RS02295 at 516.344 kb on + strand at 516.344 kb on + strand at 516.345 kb on - strand at 516.345 kb on - strand at 516.381 kb on + strand at 516.381 kb on + strand at 516.381 kb on + strand at 516.381 kb on + strand at 516.381 kb on + strand at 516.382 kb on - strand at 516.382 kb on - strand at 516.382 kb on - strand at 516.382 kb on - strand at 516.383 kb on + strand at 516.383 kb on + strand at 516.384 kb on - strand at 516.384 kb on - strand at 516.384 kb on - strand at 516.384 kb on - strand at 516.384 kb on - strand at 516.384 kb on - strand at 516.384 kb on - strand at 516.392 kb on + strand at 516.392 kb on + strand at 516.392 kb on + strand at 516.393 kb on - strand at 516.393 kb on - strand at 516.404 kb on + strand at 516.405 kb on - strand at 516.507 kb on + strand, within ABIE51_RS02300 at 516.508 kb on - strand, within ABIE51_RS02300 at 516.508 kb on - strand, within ABIE51_RS02300 at 516.508 kb on - strand, within ABIE51_RS02300 at 516.565 kb on + strand, within ABIE51_RS02300 at 516.565 kb on + strand, within ABIE51_RS02300 at 516.566 kb on - strand, within ABIE51_RS02300 at 516.566 kb on - strand, within ABIE51_RS02300 at 516.566 kb on - strand, within ABIE51_RS02300 at 516.842 kb on + strand, within ABIE51_RS02300 at 516.843 kb on - strand, within ABIE51_RS02300 at 517.103 kb on + strand, within ABIE51_RS02300 at 517.235 kb on + strand at 517.235 kb on + strand at 517.235 kb on + strand at 517.236 kb on - strand at 517.236 kb on - strand at 517.236 kb on - strand at 517.236 kb on - strand at 517.236 kb on - strand at 517.236 kb on - strand at 517.236 kb on - strand at 517.517 kb on + strand, within ABIE51_RS02305 at 517.517 kb on + strand, within ABIE51_RS02305 at 517.517 kb on + strand, within ABIE51_RS02305 at 517.517 kb on + strand, within ABIE51_RS02305 at 517.518 kb on - strand, within ABIE51_RS02305 at 517.518 kb on - strand, within ABIE51_RS02305 at 517.743 kb on + strand, within ABIE51_RS02305 at 517.743 kb on + strand, within ABIE51_RS02305 at 517.743 kb on + strand, within ABIE51_RS02305 at 517.743 kb on + strand, within ABIE51_RS02305 at 517.743 kb on + strand, within ABIE51_RS02305 at 517.743 kb on + strand, within ABIE51_RS02305 at 517.744 kb on - strand, within ABIE51_RS02305 at 517.744 kb on - strand, within ABIE51_RS02305 at 517.744 kb on - strand, within ABIE51_RS02305 at 517.744 kb on - strand, within ABIE51_RS02305 at 517.744 kb on - strand, within ABIE51_RS02305 at 517.744 kb on - strand, within ABIE51_RS02305 at 517.744 kb on - strand, within ABIE51_RS02305 at 517.824 kb on + strand at 517.825 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 515,565 - ABIE51_RS02290 0.84 +1.1 515,565 - ABIE51_RS02290 0.84 -0.4 515,571 - ABIE51_RS02290 0.85 +1.6 515,571 - ABIE51_RS02290 0.85 -0.0 515,571 - ABIE51_RS02290 0.85 +0.3 515,571 - ABIE51_RS02290 0.85 +1.4 515,571 - ABIE51_RS02290 0.85 -0.1 515,579 + ABIE51_RS02290 0.85 -0.3 515,579 + ABIE51_RS02290 0.85 -0.6 515,580 - ABIE51_RS02290 0.85 -0.4 515,580 - ABIE51_RS02290 0.85 -0.1 516,066 + ABIE51_RS02295 0.55 +1.8 516,344 + -0.2 516,344 + -3.0 516,345 - -1.1 516,345 - -1.2 516,381 + -1.2 516,381 + -4.0 516,381 + -2.8 516,381 + -1.4 516,381 + -1.8 516,382 - -1.0 516,382 - +0.4 516,382 - -2.1 516,382 - -0.8 516,383 + -1.1 516,383 + -2.8 516,384 - -3.9 516,384 - -3.2 516,384 - -1.6 516,384 - -2.7 516,384 - -3.8 516,384 - -2.0 516,384 - -3.1 516,392 + -3.1 516,392 + -4.0 516,392 + -2.4 516,393 - -2.3 516,393 - -2.0 516,404 + -3.4 516,405 - -4.5 516,507 + ABIE51_RS02300 0.19 -3.7 516,508 - ABIE51_RS02300 0.19 -4.3 516,508 - ABIE51_RS02300 0.19 -1.2 516,508 - ABIE51_RS02300 0.19 -1.8 516,565 + ABIE51_RS02300 0.25 -3.2 516,565 + ABIE51_RS02300 0.25 -2.2 516,566 - ABIE51_RS02300 0.25 -5.4 516,566 - ABIE51_RS02300 0.25 -3.9 516,566 - ABIE51_RS02300 0.25 -4.9 516,842 + ABIE51_RS02300 0.55 -2.1 516,843 - ABIE51_RS02300 0.55 -1.8 517,103 + ABIE51_RS02300 0.83 -1.2 517,235 + -2.5 517,235 + -4.6 517,235 + -2.3 517,236 - -1.9 517,236 - -4.0 517,236 - -0.2 517,236 - -4.2 517,236 - -0.2 517,236 - -3.2 517,236 - +1.4 517,517 + ABIE51_RS02305 0.36 +0.6 517,517 + ABIE51_RS02305 0.36 +0.2 517,517 + ABIE51_RS02305 0.36 +0.6 517,517 + ABIE51_RS02305 0.36 +1.2 517,518 - ABIE51_RS02305 0.37 -0.2 517,518 - ABIE51_RS02305 0.37 +0.2 517,743 + ABIE51_RS02305 0.88 +0.6 517,743 + ABIE51_RS02305 0.88 +1.1 517,743 + ABIE51_RS02305 0.88 +0.3 517,743 + ABIE51_RS02305 0.88 +0.8 517,743 + ABIE51_RS02305 0.88 +0.6 517,743 + ABIE51_RS02305 0.88 +0.8 517,744 - ABIE51_RS02305 0.88 -0.8 517,744 - ABIE51_RS02305 0.88 -0.3 517,744 - ABIE51_RS02305 0.88 -0.3 517,744 - ABIE51_RS02305 0.88 -0.4 517,744 - ABIE51_RS02305 0.88 -1.5 517,744 - ABIE51_RS02305 0.88 +0.5 517,744 - ABIE51_RS02305 0.88 -1.1 517,824 + -0.5 517,825 - -0.9
Or see this region's nucleotide sequence