Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01810 and ABIE51_RS01815 are separated by 9 nucleotides ABIE51_RS01815 and ABIE51_RS01820 are separated by 80 nucleotides
ABIE51_RS01810: ABIE51_RS01810 - DUF58 domain-containing protein, at 402,597 to 403,929
_RS01810
ABIE51_RS01815: ABIE51_RS01815 - shikimate dehydrogenase, at 403,939 to 404,781
_RS01815
ABIE51_RS01820: ABIE51_RS01820 - PD40 domain-containing protein, at 404,862 to 405,791
_RS01820
Position (kb) 403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 402.975 kb on + strand, within ABIE51_RS01810 at 403.297 kb on + strand, within ABIE51_RS01810 at 403.417 kb on + strand, within ABIE51_RS01810 at 403.417 kb on + strand, within ABIE51_RS01810 at 403.417 kb on + strand, within ABIE51_RS01810 at 403.418 kb on - strand, within ABIE51_RS01810 at 403.418 kb on - strand, within ABIE51_RS01810 at 403.418 kb on - strand, within ABIE51_RS01810 at 403.418 kb on - strand, within ABIE51_RS01810 at 403.531 kb on + strand, within ABIE51_RS01810 at 403.531 kb on + strand, within ABIE51_RS01810 at 403.532 kb on - strand, within ABIE51_RS01810 at 403.532 kb on - strand, within ABIE51_RS01810 at 403.532 kb on - strand, within ABIE51_RS01810 at 403.532 kb on - strand, within ABIE51_RS01810 at 403.795 kb on + strand, within ABIE51_RS01810 at 403.874 kb on + strand at 403.874 kb on + strand at 403.875 kb on - strand at 403.875 kb on - strand at 403.875 kb on - strand at 403.875 kb on - strand at 403.897 kb on + strand at 403.897 kb on + strand at 403.897 kb on + strand at 403.897 kb on + strand at 403.898 kb on - strand at 403.898 kb on - strand at 403.985 kb on + strand at 404.129 kb on + strand, within ABIE51_RS01815 at 404.130 kb on - strand, within ABIE51_RS01815 at 404.130 kb on - strand, within ABIE51_RS01815 at 404.339 kb on + strand, within ABIE51_RS01815 at 404.339 kb on + strand, within ABIE51_RS01815 at 404.339 kb on + strand, within ABIE51_RS01815 at 404.340 kb on - strand, within ABIE51_RS01815 at 404.829 kb on + strand at 404.829 kb on + strand at 404.829 kb on + strand at 404.829 kb on + strand at 404.830 kb on - strand at 404.830 kb on - strand at 404.830 kb on - strand at 404.830 kb on - strand at 404.830 kb on - strand at 404.892 kb on + strand at 404.893 kb on - strand at 404.893 kb on - strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.909 kb on - strand at 404.909 kb on - strand at 404.909 kb on - strand at 404.909 kb on - strand at 404.909 kb on - strand at 405.050 kb on + strand, within ABIE51_RS01820 at 405.050 kb on + strand, within ABIE51_RS01820 at 405.050 kb on + strand, within ABIE51_RS01820 at 405.050 kb on + strand, within ABIE51_RS01820 at 405.050 kb on + strand, within ABIE51_RS01820 at 405.051 kb on - strand, within ABIE51_RS01820 at 405.051 kb on - strand, within ABIE51_RS01820 at 405.051 kb on - strand, within ABIE51_RS01820 at 405.051 kb on - strand, within ABIE51_RS01820 at 405.051 kb on - strand, within ABIE51_RS01820 at 405.051 kb on - strand, within ABIE51_RS01820 at 405.051 kb on - strand, within ABIE51_RS01820 at 405.210 kb on + strand, within ABIE51_RS01820 at 405.211 kb on - strand, within ABIE51_RS01820 at 405.211 kb on - strand, within ABIE51_RS01820 at 405.211 kb on - strand, within ABIE51_RS01820 at 405.211 kb on - strand, within ABIE51_RS01820 at 405.255 kb on + strand, within ABIE51_RS01820 at 405.531 kb on + strand, within ABIE51_RS01820 at 405.532 kb on - strand, within ABIE51_RS01820 at 405.532 kb on - strand, within ABIE51_RS01820 at 405.600 kb on + strand, within ABIE51_RS01820 at 405.742 kb on - strand at 405.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 402,975 + ABIE51_RS01810 0.28 +0.1 403,297 + ABIE51_RS01810 0.53 +0.2 403,417 + ABIE51_RS01810 0.62 +0.2 403,417 + ABIE51_RS01810 0.62 -0.2 403,417 + ABIE51_RS01810 0.62 -0.0 403,418 - ABIE51_RS01810 0.62 -0.5 403,418 - ABIE51_RS01810 0.62 -0.0 403,418 - ABIE51_RS01810 0.62 -0.1 403,418 - ABIE51_RS01810 0.62 +0.0 403,531 + ABIE51_RS01810 0.70 +0.5 403,531 + ABIE51_RS01810 0.70 +0.7 403,532 - ABIE51_RS01810 0.70 +0.3 403,532 - ABIE51_RS01810 0.70 +0.3 403,532 - ABIE51_RS01810 0.70 -0.3 403,532 - ABIE51_RS01810 0.70 -1.5 403,795 + ABIE51_RS01810 0.90 +0.2 403,874 + +2.1 403,874 + +0.6 403,875 - +0.6 403,875 - +0.7 403,875 - +0.2 403,875 - +0.3 403,897 + -0.0 403,897 + +0.1 403,897 + +0.9 403,897 + +0.2 403,898 - +0.2 403,898 - -0.2 403,985 + -1.4 404,129 + ABIE51_RS01815 0.23 -0.6 404,130 - ABIE51_RS01815 0.23 -2.1 404,130 - ABIE51_RS01815 0.23 -2.2 404,339 + ABIE51_RS01815 0.47 -3.4 404,339 + ABIE51_RS01815 0.47 -1.6 404,339 + ABIE51_RS01815 0.47 -1.2 404,340 - ABIE51_RS01815 0.48 +2.0 404,829 + +0.1 404,829 + +0.4 404,829 + +0.3 404,829 + -0.2 404,830 - -0.6 404,830 - +0.2 404,830 - -0.3 404,830 - +0.4 404,830 - -0.5 404,892 + +1.0 404,893 - -0.1 404,893 - +1.4 404,908 + +1.3 404,908 + +0.3 404,908 + -0.0 404,908 + -0.4 404,908 + +0.0 404,908 + +0.1 404,908 + -0.0 404,908 + +0.4 404,908 + -0.1 404,908 + +0.4 404,908 + -0.3 404,909 - -0.5 404,909 - -0.3 404,909 - -0.4 404,909 - +1.4 404,909 - -0.5 405,050 + ABIE51_RS01820 0.20 -0.2 405,050 + ABIE51_RS01820 0.20 +1.4 405,050 + ABIE51_RS01820 0.20 +0.1 405,050 + ABIE51_RS01820 0.20 +0.4 405,050 + ABIE51_RS01820 0.20 -0.1 405,051 - ABIE51_RS01820 0.20 -0.2 405,051 - ABIE51_RS01820 0.20 -0.2 405,051 - ABIE51_RS01820 0.20 -0.2 405,051 - ABIE51_RS01820 0.20 -0.2 405,051 - ABIE51_RS01820 0.20 +0.1 405,051 - ABIE51_RS01820 0.20 -0.9 405,051 - ABIE51_RS01820 0.20 +0.2 405,210 + ABIE51_RS01820 0.37 +0.2 405,211 - ABIE51_RS01820 0.38 -0.4 405,211 - ABIE51_RS01820 0.38 +0.1 405,211 - ABIE51_RS01820 0.38 +0.1 405,211 - ABIE51_RS01820 0.38 -0.0 405,255 + ABIE51_RS01820 0.42 -0.1 405,531 + ABIE51_RS01820 0.72 -2.1 405,532 - ABIE51_RS01820 0.72 +1.9 405,532 - ABIE51_RS01820 0.72 +0.1 405,600 + ABIE51_RS01820 0.79 +0.3 405,742 - +1.3 405,742 - -0.3
Or see this region's nucleotide sequence