Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01370 and ABIE51_RS01375 are separated by 18 nucleotides ABIE51_RS01375 and ABIE51_RS01380 are separated by 394 nucleotides ABIE51_RS01380 and ABIE51_RS01385 are separated by 251 nucleotides
ABIE51_RS01370: ABIE51_RS01370 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 293,935 to 296,115
_RS01370
ABIE51_RS01375: ABIE51_RS01375 - nuclear transport factor 2 family protein, at 296,134 to 296,571
_RS01375
ABIE51_RS01380: ABIE51_RS01380 - hypothetical protein, at 296,966 to 297,283
_RS01380
ABIE51_RS01385: ABIE51_RS01385 - alpha/beta hydrolase, at 297,535 to 298,830
_RS01385
Position (kb) 296
297
298 Strain fitness (log2 ratio) -2
-1
0
1 at 296.113 kb on + strand at 296.150 kb on + strand at 296.377 kb on - strand, within ABIE51_RS01375 at 296.377 kb on - strand, within ABIE51_RS01375 at 296.377 kb on - strand, within ABIE51_RS01375 at 296.463 kb on - strand, within ABIE51_RS01375 at 296.463 kb on - strand, within ABIE51_RS01375 at 296.585 kb on + strand at 296.585 kb on + strand at 296.585 kb on + strand at 296.586 kb on - strand at 296.586 kb on - strand at 296.665 kb on - strand at 296.728 kb on + strand at 296.729 kb on - strand at 296.900 kb on + strand at 296.900 kb on + strand at 296.900 kb on + strand at 296.900 kb on + strand at 296.900 kb on + strand at 296.900 kb on + strand at 296.967 kb on + strand at 296.967 kb on + strand at 296.967 kb on + strand at 296.967 kb on + strand at 296.967 kb on + strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.970 kb on - strand at 297.021 kb on + strand, within ABIE51_RS01380 at 297.021 kb on + strand, within ABIE51_RS01380 at 297.021 kb on + strand, within ABIE51_RS01380 at 297.021 kb on + strand, within ABIE51_RS01380 at 297.021 kb on + strand, within ABIE51_RS01380 at 297.021 kb on + strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.044 kb on + strand, within ABIE51_RS01380 at 297.044 kb on + strand, within ABIE51_RS01380 at 297.044 kb on + strand, within ABIE51_RS01380 at 297.057 kb on + strand, within ABIE51_RS01380 at 297.057 kb on + strand, within ABIE51_RS01380 at 297.058 kb on - strand, within ABIE51_RS01380 at 297.097 kb on + strand, within ABIE51_RS01380 at 297.097 kb on + strand, within ABIE51_RS01380 at 297.098 kb on - strand, within ABIE51_RS01380 at 297.188 kb on + strand, within ABIE51_RS01380 at 297.188 kb on + strand, within ABIE51_RS01380 at 297.188 kb on + strand, within ABIE51_RS01380 at 297.188 kb on + strand, within ABIE51_RS01380 at 297.189 kb on - strand, within ABIE51_RS01380 at 297.189 kb on - strand, within ABIE51_RS01380 at 297.189 kb on - strand, within ABIE51_RS01380 at 297.189 kb on - strand, within ABIE51_RS01380 at 297.189 kb on - strand, within ABIE51_RS01380 at 297.189 kb on - strand, within ABIE51_RS01380 at 297.196 kb on + strand, within ABIE51_RS01380 at 297.196 kb on + strand, within ABIE51_RS01380 at 297.206 kb on + strand, within ABIE51_RS01380 at 297.207 kb on - strand, within ABIE51_RS01380 at 297.207 kb on - strand, within ABIE51_RS01380 at 297.218 kb on + strand, within ABIE51_RS01380 at 297.219 kb on - strand, within ABIE51_RS01380 at 297.219 kb on - strand, within ABIE51_RS01380 at 297.248 kb on + strand, within ABIE51_RS01380 at 297.249 kb on - strand, within ABIE51_RS01380 at 297.283 kb on + strand at 297.283 kb on + strand at 297.283 kb on + strand at 297.283 kb on + strand at 297.283 kb on + strand at 297.283 kb on + strand at 297.283 kb on + strand at 297.283 kb on + strand at 297.283 kb on + strand at 297.283 kb on + strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.284 kb on - strand at 297.310 kb on + strand at 297.311 kb on - strand at 297.350 kb on + strand at 297.350 kb on + strand at 297.350 kb on + strand at 297.350 kb on + strand at 297.350 kb on + strand at 297.350 kb on + strand at 297.351 kb on - strand at 297.351 kb on - strand at 297.351 kb on - strand at 297.351 kb on - strand at 297.351 kb on - strand at 297.351 kb on - strand at 297.351 kb on - strand at 297.450 kb on + strand at 297.451 kb on - strand at 297.451 kb on - strand at 297.604 kb on + strand at 297.605 kb on - strand at 297.633 kb on + strand at 297.946 kb on + strand, within ABIE51_RS01385 at 298.012 kb on + strand, within ABIE51_RS01385 at 298.013 kb on - strand, within ABIE51_RS01385 at 298.048 kb on + strand, within ABIE51_RS01385 at 298.050 kb on + strand, within ABIE51_RS01385 at 298.050 kb on + strand, within ABIE51_RS01385 at 298.050 kb on + strand, within ABIE51_RS01385 at 298.050 kb on + strand, within ABIE51_RS01385 at 298.050 kb on + strand, within ABIE51_RS01385 at 298.051 kb on - strand, within ABIE51_RS01385 at 298.051 kb on - strand, within ABIE51_RS01385 at 298.051 kb on - strand, within ABIE51_RS01385 at 298.051 kb on - strand, within ABIE51_RS01385 at 298.051 kb on - strand, within ABIE51_RS01385 at 298.141 kb on + strand, within ABIE51_RS01385 at 298.142 kb on - strand, within ABIE51_RS01385
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 296,113 + -0.5 296,150 + -0.9 296,377 - ABIE51_RS01375 0.55 -0.3 296,377 - ABIE51_RS01375 0.55 -0.6 296,377 - ABIE51_RS01375 0.55 +0.6 296,463 - ABIE51_RS01375 0.75 -0.1 296,463 - ABIE51_RS01375 0.75 +0.1 296,585 + -0.4 296,585 + +0.2 296,585 + -0.6 296,586 - -0.5 296,586 - -0.1 296,665 - -0.4 296,728 + +0.1 296,729 - -0.2 296,900 + -0.1 296,900 + -0.1 296,900 + -0.2 296,900 + -0.1 296,900 + +0.0 296,900 + +1.4 296,967 + -0.6 296,967 + +0.7 296,967 + -0.6 296,967 + +0.3 296,967 + -0.2 296,968 - -0.1 296,968 - -0.6 296,968 - +0.4 296,968 - -0.3 296,968 - -0.0 296,968 - +0.4 296,968 - +0.0 296,968 - -0.0 296,969 + +0.4 296,969 + -2.6 296,969 + +0.7 296,969 + +1.2 296,969 + -0.3 296,969 + +0.4 296,969 + -0.3 296,970 - -0.2 297,021 + ABIE51_RS01380 0.17 +0.4 297,021 + ABIE51_RS01380 0.17 +0.5 297,021 + ABIE51_RS01380 0.17 -0.3 297,021 + ABIE51_RS01380 0.17 +0.1 297,021 + ABIE51_RS01380 0.17 +0.4 297,021 + ABIE51_RS01380 0.17 -0.4 297,022 - ABIE51_RS01380 0.18 +0.4 297,022 - ABIE51_RS01380 0.18 +0.7 297,022 - ABIE51_RS01380 0.18 +0.4 297,022 - ABIE51_RS01380 0.18 -0.1 297,022 - ABIE51_RS01380 0.18 -0.2 297,022 - ABIE51_RS01380 0.18 -0.2 297,022 - ABIE51_RS01380 0.18 +0.3 297,022 - ABIE51_RS01380 0.18 +0.2 297,044 + ABIE51_RS01380 0.25 -0.2 297,044 + ABIE51_RS01380 0.25 -0.1 297,044 + ABIE51_RS01380 0.25 +0.0 297,057 + ABIE51_RS01380 0.29 +0.2 297,057 + ABIE51_RS01380 0.29 +0.0 297,058 - ABIE51_RS01380 0.29 +0.1 297,097 + ABIE51_RS01380 0.41 +0.2 297,097 + ABIE51_RS01380 0.41 -0.5 297,098 - ABIE51_RS01380 0.42 +0.6 297,188 + ABIE51_RS01380 0.70 -0.2 297,188 + ABIE51_RS01380 0.70 +0.2 297,188 + ABIE51_RS01380 0.70 +0.4 297,188 + ABIE51_RS01380 0.70 +0.5 297,189 - ABIE51_RS01380 0.70 -0.2 297,189 - ABIE51_RS01380 0.70 +1.1 297,189 - ABIE51_RS01380 0.70 +0.7 297,189 - ABIE51_RS01380 0.70 +0.6 297,189 - ABIE51_RS01380 0.70 -0.1 297,189 - ABIE51_RS01380 0.70 +0.2 297,196 + ABIE51_RS01380 0.72 +0.2 297,196 + ABIE51_RS01380 0.72 -0.3 297,206 + ABIE51_RS01380 0.75 -0.6 297,207 - ABIE51_RS01380 0.76 +0.3 297,207 - ABIE51_RS01380 0.76 -0.4 297,218 + ABIE51_RS01380 0.79 +1.2 297,219 - ABIE51_RS01380 0.80 +0.8 297,219 - ABIE51_RS01380 0.80 +0.5 297,248 + ABIE51_RS01380 0.89 +0.0 297,249 - ABIE51_RS01380 0.89 +0.7 297,283 + +0.7 297,283 + +0.3 297,283 + -0.1 297,283 + +0.2 297,283 + +0.4 297,283 + -0.1 297,283 + -0.0 297,283 + +0.5 297,283 + +0.4 297,283 + -0.1 297,284 - -0.8 297,284 - +0.4 297,284 - -0.0 297,284 - +0.5 297,284 - +0.8 297,284 - -1.3 297,284 - +0.7 297,284 - -0.6 297,284 - +0.8 297,284 - +0.4 297,284 - -0.3 297,284 - +0.7 297,284 - +0.0 297,284 - +0.3 297,284 - +0.1 297,284 - -0.0 297,284 - -0.3 297,284 - +0.2 297,284 - +0.6 297,310 + +0.1 297,311 - +0.4 297,350 + -0.7 297,350 + +0.0 297,350 + -0.1 297,350 + +0.5 297,350 + +0.1 297,350 + +0.1 297,351 - +0.8 297,351 - +0.4 297,351 - +0.7 297,351 - +0.7 297,351 - +0.2 297,351 - +0.2 297,351 - +0.4 297,450 + +0.4 297,451 - +0.3 297,451 - -0.3 297,604 + +0.5 297,605 - +0.7 297,633 + -0.1 297,946 + ABIE51_RS01385 0.32 +0.7 298,012 + ABIE51_RS01385 0.37 +0.4 298,013 - ABIE51_RS01385 0.37 +0.3 298,048 + ABIE51_RS01385 0.40 -0.0 298,050 + ABIE51_RS01385 0.40 +0.5 298,050 + ABIE51_RS01385 0.40 +1.3 298,050 + ABIE51_RS01385 0.40 -0.5 298,050 + ABIE51_RS01385 0.40 +0.2 298,050 + ABIE51_RS01385 0.40 -0.4 298,051 - ABIE51_RS01385 0.40 +0.0 298,051 - ABIE51_RS01385 0.40 -0.1 298,051 - ABIE51_RS01385 0.40 +0.2 298,051 - ABIE51_RS01385 0.40 +1.4 298,051 - ABIE51_RS01385 0.40 +0.7 298,141 + ABIE51_RS01385 0.47 +0.5 298,142 - ABIE51_RS01385 0.47 -0.0
Or see this region's nucleotide sequence