Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS01315

Experiment: Ying_OrganicAcid7 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS01305 and ABIE51_RS01310 are separated by 65 nucleotidesABIE51_RS01310 and ABIE51_RS01315 are separated by 24 nucleotidesABIE51_RS01315 and ABIE51_RS01320 are separated by 5 nucleotides ABIE51_RS01305: ABIE51_RS01305 - tRNA 2-thiocytidine(32) synthetase TtcA, at 278,901 to 279,800 _RS01305 ABIE51_RS01310: ABIE51_RS01310 - YdcH family protein, at 279,866 to 280,075 _RS01310 ABIE51_RS01315: ABIE51_RS01315 - FAD-dependent oxidoreductase, at 280,100 to 281,581 _RS01315 ABIE51_RS01320: ABIE51_RS01320 - glutamate synthase large subunit, at 281,587 to 286,054 _RS01320 Position (kb) 280 281 282Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 279.178 kb on + strand, within ABIE51_RS01305at 279.206 kb on - strand, within ABIE51_RS01305at 279.367 kb on + strand, within ABIE51_RS01305at 279.367 kb on + strand, within ABIE51_RS01305at 279.367 kb on + strand, within ABIE51_RS01305at 279.368 kb on - strand, within ABIE51_RS01305at 279.373 kb on + strand, within ABIE51_RS01305at 279.373 kb on + strand, within ABIE51_RS01305at 279.373 kb on + strand, within ABIE51_RS01305at 279.373 kb on + strand, within ABIE51_RS01305at 279.373 kb on + strand, within ABIE51_RS01305at 279.373 kb on + strand, within ABIE51_RS01305at 279.373 kb on + strand, within ABIE51_RS01305at 279.374 kb on - strand, within ABIE51_RS01305at 279.374 kb on - strand, within ABIE51_RS01305at 279.374 kb on - strand, within ABIE51_RS01305at 279.451 kb on + strand, within ABIE51_RS01305at 279.451 kb on + strand, within ABIE51_RS01305at 279.452 kb on - strand, within ABIE51_RS01305at 279.452 kb on - strand, within ABIE51_RS01305at 279.452 kb on - strand, within ABIE51_RS01305at 279.452 kb on - strand, within ABIE51_RS01305at 279.452 kb on - strand, within ABIE51_RS01305at 279.499 kb on + strand, within ABIE51_RS01305at 279.616 kb on + strand, within ABIE51_RS01305at 279.616 kb on + strand, within ABIE51_RS01305at 279.616 kb on + strand, within ABIE51_RS01305at 279.616 kb on + strand, within ABIE51_RS01305at 279.616 kb on + strand, within ABIE51_RS01305at 279.616 kb on + strand, within ABIE51_RS01305at 279.616 kb on + strand, within ABIE51_RS01305at 279.616 kb on + strand, within ABIE51_RS01305at 279.616 kb on + strand, within ABIE51_RS01305at 279.616 kb on + strand, within ABIE51_RS01305at 279.616 kb on + strand, within ABIE51_RS01305at 279.616 kb on + strand, within ABIE51_RS01305at 279.617 kb on - strand, within ABIE51_RS01305at 279.617 kb on - strand, within ABIE51_RS01305at 279.617 kb on - strand, within ABIE51_RS01305at 279.617 kb on - strand, within ABIE51_RS01305at 279.617 kb on - strand, within ABIE51_RS01305at 279.617 kb on - strand, within ABIE51_RS01305at 279.794 kb on + strandat 279.795 kb on - strandat 280.102 kb on - strandat 280.149 kb on + strandat 280.149 kb on + strandat 280.149 kb on + strandat 280.150 kb on - strandat 280.150 kb on - strandat 280.150 kb on - strandat 280.150 kb on - strandat 280.842 kb on + strand, within ABIE51_RS01315at 280.842 kb on + strand, within ABIE51_RS01315at 280.843 kb on - strand, within ABIE51_RS01315at 280.848 kb on + strand, within ABIE51_RS01315at 280.848 kb on + strand, within ABIE51_RS01315at 280.849 kb on - strand, within ABIE51_RS01315at 280.849 kb on - strand, within ABIE51_RS01315at 280.849 kb on - strand, within ABIE51_RS01315at 280.849 kb on - strand, within ABIE51_RS01315at 281.199 kb on + strand, within ABIE51_RS01315at 281.199 kb on + strand, within ABIE51_RS01315at 281.199 kb on + strand, within ABIE51_RS01315at 281.200 kb on - strand, within ABIE51_RS01315at 281.200 kb on - strand, within ABIE51_RS01315at 281.200 kb on - strand, within ABIE51_RS01315at 281.283 kb on - strand, within ABIE51_RS01315at 281.382 kb on + strand, within ABIE51_RS01315at 281.382 kb on + strand, within ABIE51_RS01315at 281.382 kb on + strand, within ABIE51_RS01315at 281.382 kb on + strand, within ABIE51_RS01315at 281.382 kb on + strand, within ABIE51_RS01315at 281.383 kb on - strand, within ABIE51_RS01315at 281.383 kb on - strand, within ABIE51_RS01315at 281.478 kb on + strandat 281.478 kb on + strandat 281.479 kb on - strandat 281.479 kb on - strandat 281.637 kb on + strandat 281.638 kb on - strandat 281.810 kb on + strandat 281.811 kb on - strandat 281.846 kb on + strandat 281.846 kb on + strandat 281.847 kb on - strandat 281.847 kb on - strandat 281.847 kb on - strandat 281.924 kb on + strandat 281.925 kb on - strandat 281.925 kb on - strandat 282.140 kb on + strand, within ABIE51_RS01320at 282.141 kb on - strand, within ABIE51_RS01320at 282.141 kb on - strand, within ABIE51_RS01320at 282.141 kb on - strand, within ABIE51_RS01320at 282.326 kb on + strand, within ABIE51_RS01320at 282.327 kb on - strand, within ABIE51_RS01320at 282.327 kb on - strand, within ABIE51_RS01320at 282.327 kb on - strand, within ABIE51_RS01320at 282.332 kb on + strand, within ABIE51_RS01320at 282.333 kb on - strand, within ABIE51_RS01320at 282.547 kb on + strand, within ABIE51_RS01320at 282.547 kb on + strand, within ABIE51_RS01320at 282.548 kb on - strand, within ABIE51_RS01320

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2
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279,178 + ABIE51_RS01305 0.31 -0.8
279,206 - ABIE51_RS01305 0.34 -0.7
279,367 + ABIE51_RS01305 0.52 -0.3
279,367 + ABIE51_RS01305 0.52 -0.0
279,367 + ABIE51_RS01305 0.52 -0.7
279,368 - ABIE51_RS01305 0.52 -1.0
279,373 + ABIE51_RS01305 0.52 -0.4
279,373 + ABIE51_RS01305 0.52 +0.6
279,373 + ABIE51_RS01305 0.52 +0.9
279,373 + ABIE51_RS01305 0.52 +0.0
279,373 + ABIE51_RS01305 0.52 -0.1
279,373 + ABIE51_RS01305 0.52 -0.2
279,373 + ABIE51_RS01305 0.52 +0.4
279,374 - ABIE51_RS01305 0.53 -0.8
279,374 - ABIE51_RS01305 0.53 +1.4
279,374 - ABIE51_RS01305 0.53 +0.1
279,451 + ABIE51_RS01305 0.61 +0.6
279,451 + ABIE51_RS01305 0.61 +0.2
279,452 - ABIE51_RS01305 0.61 +0.2
279,452 - ABIE51_RS01305 0.61 -0.7
279,452 - ABIE51_RS01305 0.61 -0.3
279,452 - ABIE51_RS01305 0.61 -0.8
279,452 - ABIE51_RS01305 0.61 -0.3
279,499 + ABIE51_RS01305 0.66 -0.3
279,616 + ABIE51_RS01305 0.79 +0.8
279,616 + ABIE51_RS01305 0.79 +0.9
279,616 + ABIE51_RS01305 0.79 -0.2
279,616 + ABIE51_RS01305 0.79 +1.0
279,616 + ABIE51_RS01305 0.79 -0.0
279,616 + ABIE51_RS01305 0.79 +0.2
279,616 + ABIE51_RS01305 0.79 +0.5
279,616 + ABIE51_RS01305 0.79 -0.0
279,616 + ABIE51_RS01305 0.79 +0.3
279,616 + ABIE51_RS01305 0.79 +0.2
279,616 + ABIE51_RS01305 0.79 +0.5
279,616 + ABIE51_RS01305 0.79 +0.3
279,617 - ABIE51_RS01305 0.80 +0.1
279,617 - ABIE51_RS01305 0.80 -0.8
279,617 - ABIE51_RS01305 0.80 +0.0
279,617 - ABIE51_RS01305 0.80 -0.6
279,617 - ABIE51_RS01305 0.80 +0.3
279,617 - ABIE51_RS01305 0.80 -0.5
279,794 + -0.6
279,795 - +0.9
280,102 - -0.5
280,149 + -2.0
280,149 + -3.3
280,149 + -3.5
280,150 - -2.1
280,150 - -2.1
280,150 - -0.2
280,150 - -2.6
280,842 + ABIE51_RS01315 0.50 -2.3
280,842 + ABIE51_RS01315 0.50 -3.4
280,843 - ABIE51_RS01315 0.50 -2.8
280,848 + ABIE51_RS01315 0.50 -2.9
280,848 + ABIE51_RS01315 0.50 -1.9
280,849 - ABIE51_RS01315 0.51 -3.2
280,849 - ABIE51_RS01315 0.51 -2.2
280,849 - ABIE51_RS01315 0.51 +0.4
280,849 - ABIE51_RS01315 0.51 -0.9
281,199 + ABIE51_RS01315 0.74 -1.2
281,199 + ABIE51_RS01315 0.74 -1.6
281,199 + ABIE51_RS01315 0.74 -2.5
281,200 - ABIE51_RS01315 0.74 -1.6
281,200 - ABIE51_RS01315 0.74 -2.6
281,200 - ABIE51_RS01315 0.74 -3.3
281,283 - ABIE51_RS01315 0.80 -1.7
281,382 + ABIE51_RS01315 0.87 -1.2
281,382 + ABIE51_RS01315 0.87 -3.6
281,382 + ABIE51_RS01315 0.87 -1.4
281,382 + ABIE51_RS01315 0.87 -3.3
281,382 + ABIE51_RS01315 0.87 -1.3
281,383 - ABIE51_RS01315 0.87 -2.8
281,383 - ABIE51_RS01315 0.87 -3.3
281,478 + -3.1
281,478 + -2.8
281,479 - -2.2
281,479 - -2.5
281,637 + -2.7
281,638 - -0.6
281,810 + -1.0
281,811 - -4.6
281,846 + -2.3
281,846 + -1.6
281,847 - -3.3
281,847 - -2.9
281,847 - -3.8
281,924 + -3.2
281,925 - -3.7
281,925 - -0.2
282,140 + ABIE51_RS01320 0.12 -2.2
282,141 - ABIE51_RS01320 0.12 -3.2
282,141 - ABIE51_RS01320 0.12 -1.8
282,141 - ABIE51_RS01320 0.12 -3.7
282,326 + ABIE51_RS01320 0.17 -2.5
282,327 - ABIE51_RS01320 0.17 -1.7
282,327 - ABIE51_RS01320 0.17 -1.2
282,327 - ABIE51_RS01320 0.17 -2.5
282,332 + ABIE51_RS01320 0.17 -2.0
282,333 - ABIE51_RS01320 0.17 -3.3
282,547 + ABIE51_RS01320 0.21 -2.1
282,547 + ABIE51_RS01320 0.21 -2.4
282,548 - ABIE51_RS01320 0.22 -2.2

Or see this region's nucleotide sequence