Experiment: PM with p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_024250 and TX73_024255 are separated by 305 nucleotides TX73_024255 and TX73_024260 are separated by 110 nucleotides TX73_024260 and TX73_024265 are separated by 108 nucleotides
TX73_024250: TX73_024250 - 2-isopropylmalate synthase, at 5,259,975 to 5,261,636
_024250
TX73_024255: TX73_024255 - (2Fe-2S)-binding protein, at 5,261,942 to 5,262,427
_024255
TX73_024260: TX73_024260 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 5,262,538 to 5,264,892
_024260
TX73_024265: TX73_024265 - xanthine dehydrogenase family protein subunit M, at 5,265,001 to 5,265,801
_024265
Position (kb) 5262
5263
5264
5265 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5261.559 kb on + strand at 5261.561 kb on + strand at 5261.567 kb on - strand at 5261.603 kb on - strand at 5261.690 kb on - strand at 5261.695 kb on - strand at 5261.718 kb on + strand at 5261.718 kb on + strand at 5261.726 kb on - strand at 5261.726 kb on - strand at 5261.726 kb on - strand at 5261.726 kb on - strand at 5261.741 kb on - strand at 5261.862 kb on - strand at 5261.862 kb on - strand at 5261.893 kb on - strand at 5261.932 kb on + strand at 5261.944 kb on + strand at 5261.951 kb on + strand at 5261.959 kb on - strand at 5261.961 kb on - strand at 5261.977 kb on + strand at 5262.009 kb on + strand, within TX73_024255 at 5262.012 kb on + strand, within TX73_024255 at 5262.012 kb on + strand, within TX73_024255 at 5262.015 kb on - strand, within TX73_024255 at 5262.022 kb on - strand, within TX73_024255 at 5262.048 kb on - strand, within TX73_024255 at 5262.069 kb on + strand, within TX73_024255 at 5262.095 kb on + strand, within TX73_024255 at 5262.115 kb on + strand, within TX73_024255 at 5262.162 kb on - strand, within TX73_024255 at 5262.175 kb on + strand, within TX73_024255 at 5262.183 kb on - strand, within TX73_024255 at 5262.183 kb on - strand, within TX73_024255 at 5262.191 kb on - strand, within TX73_024255 at 5262.191 kb on - strand, within TX73_024255 at 5262.230 kb on + strand, within TX73_024255 at 5262.276 kb on + strand, within TX73_024255 at 5262.286 kb on + strand, within TX73_024255 at 5262.294 kb on - strand, within TX73_024255 at 5262.379 kb on - strand at 5262.400 kb on + strand at 5262.417 kb on + strand at 5262.441 kb on - strand at 5262.525 kb on - strand at 5262.636 kb on - strand at 5262.662 kb on + strand at 5262.662 kb on + strand at 5262.670 kb on - strand at 5262.681 kb on + strand at 5262.704 kb on + strand at 5262.750 kb on - strand at 5262.780 kb on - strand, within TX73_024260 at 5262.793 kb on + strand, within TX73_024260 at 5262.798 kb on + strand, within TX73_024260 at 5262.810 kb on - strand, within TX73_024260 at 5262.814 kb on + strand, within TX73_024260 at 5262.952 kb on - strand, within TX73_024260 at 5262.969 kb on + strand, within TX73_024260 at 5263.000 kb on - strand, within TX73_024260 at 5263.038 kb on - strand, within TX73_024260 at 5263.077 kb on + strand, within TX73_024260 at 5263.085 kb on - strand, within TX73_024260 at 5263.108 kb on - strand, within TX73_024260 at 5263.123 kb on + strand, within TX73_024260 at 5263.174 kb on + strand, within TX73_024260 at 5263.192 kb on + strand, within TX73_024260 at 5263.202 kb on - strand, within TX73_024260 at 5263.202 kb on - strand, within TX73_024260 at 5263.202 kb on - strand, within TX73_024260 at 5263.253 kb on - strand, within TX73_024260 at 5263.253 kb on - strand, within TX73_024260 at 5263.262 kb on + strand, within TX73_024260 at 5263.269 kb on + strand, within TX73_024260 at 5263.307 kb on + strand, within TX73_024260 at 5263.377 kb on + strand, within TX73_024260 at 5263.488 kb on + strand, within TX73_024260 at 5263.496 kb on - strand, within TX73_024260 at 5263.496 kb on - strand, within TX73_024260 at 5263.546 kb on + strand, within TX73_024260 at 5263.574 kb on - strand, within TX73_024260 at 5263.586 kb on - strand, within TX73_024260 at 5263.586 kb on - strand, within TX73_024260 at 5263.636 kb on + strand, within TX73_024260 at 5263.661 kb on + strand, within TX73_024260 at 5263.669 kb on - strand, within TX73_024260 at 5263.721 kb on - strand, within TX73_024260 at 5263.781 kb on - strand, within TX73_024260 at 5263.789 kb on + strand, within TX73_024260 at 5263.829 kb on + strand, within TX73_024260 at 5263.868 kb on + strand, within TX73_024260 at 5263.869 kb on + strand, within TX73_024260 at 5263.875 kb on + strand, within TX73_024260 at 5263.883 kb on - strand, within TX73_024260 at 5263.901 kb on + strand, within TX73_024260 at 5263.906 kb on + strand, within TX73_024260 at 5263.906 kb on + strand, within TX73_024260 at 5263.909 kb on - strand, within TX73_024260 at 5263.914 kb on + strand, within TX73_024260 at 5263.929 kb on + strand, within TX73_024260 at 5263.935 kb on - strand, within TX73_024260 at 5263.952 kb on + strand, within TX73_024260 at 5263.991 kb on + strand, within TX73_024260 at 5264.012 kb on - strand, within TX73_024260 at 5264.048 kb on + strand, within TX73_024260 at 5264.048 kb on + strand, within TX73_024260 at 5264.056 kb on - strand, within TX73_024260 at 5264.061 kb on - strand, within TX73_024260 at 5264.061 kb on - strand, within TX73_024260 at 5264.118 kb on + strand, within TX73_024260 at 5264.125 kb on + strand, within TX73_024260 at 5264.126 kb on - strand, within TX73_024260 at 5264.154 kb on + strand, within TX73_024260 at 5264.191 kb on + strand, within TX73_024260 at 5264.216 kb on - strand, within TX73_024260 at 5264.226 kb on + strand, within TX73_024260 at 5264.312 kb on - strand, within TX73_024260 at 5264.338 kb on + strand, within TX73_024260 at 5264.348 kb on - strand, within TX73_024260 at 5264.368 kb on + strand, within TX73_024260 at 5264.399 kb on + strand, within TX73_024260 at 5264.407 kb on - strand, within TX73_024260 at 5264.458 kb on - strand, within TX73_024260 at 5264.474 kb on - strand, within TX73_024260 at 5264.551 kb on - strand, within TX73_024260 at 5264.560 kb on + strand, within TX73_024260 at 5264.566 kb on + strand, within TX73_024260 at 5264.566 kb on + strand, within TX73_024260 at 5264.580 kb on + strand, within TX73_024260 at 5264.581 kb on + strand, within TX73_024260 at 5264.589 kb on - strand, within TX73_024260 at 5264.610 kb on - strand, within TX73_024260 at 5264.645 kb on - strand, within TX73_024260 at 5264.727 kb on + strand at 5264.790 kb on + strand at 5264.801 kb on + strand at 5264.809 kb on - strand at 5264.882 kb on + strand at 5264.909 kb on - strand at 5264.924 kb on + strand at 5264.924 kb on + strand at 5264.932 kb on - strand at 5264.989 kb on - strand at 5265.092 kb on + strand, within TX73_024265 at 5265.130 kb on + strand, within TX73_024265 at 5265.130 kb on + strand, within TX73_024265 at 5265.138 kb on - strand, within TX73_024265 at 5265.171 kb on + strand, within TX73_024265 at 5265.179 kb on - strand, within TX73_024265 at 5265.191 kb on - strand, within TX73_024265 at 5265.289 kb on + strand, within TX73_024265 at 5265.307 kb on + strand, within TX73_024265 at 5265.307 kb on - strand, within TX73_024265 at 5265.307 kb on - strand, within TX73_024265 at 5265.371 kb on - strand, within TX73_024265 at 5265.397 kb on + strand, within TX73_024265 at 5265.405 kb on - strand, within TX73_024265 at 5265.443 kb on - strand, within TX73_024265 at 5265.447 kb on + strand, within TX73_024265 at 5265.447 kb on + strand, within TX73_024265 at 5265.453 kb on - strand, within TX73_024265 at 5265.455 kb on - strand, within TX73_024265 at 5265.455 kb on - strand, within TX73_024265 at 5265.455 kb on - strand, within TX73_024265 at 5265.558 kb on - strand, within TX73_024265 at 5265.576 kb on + strand, within TX73_024265 at 5265.584 kb on - strand, within TX73_024265 at 5265.591 kb on + strand, within TX73_024265 at 5265.616 kb on + strand, within TX73_024265 at 5265.633 kb on - strand, within TX73_024265 at 5265.692 kb on + strand, within TX73_024265 at 5265.700 kb on - strand, within TX73_024265 at 5265.745 kb on - strand at 5265.754 kb on + strand at 5265.784 kb on + strand at 5265.792 kb on - strand at 5265.804 kb on - strand at 5265.819 kb on - strand at 5265.843 kb on + strand at 5265.843 kb on + strand at 5265.843 kb on + strand at 5265.849 kb on - strand at 5265.851 kb on - strand at 5265.882 kb on - strand at 5265.889 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PM with p-Coumaric (C) remove 5,261,559 + -0.2 5,261,561 + +1.3 5,261,567 - -0.7 5,261,603 - +0.3 5,261,690 - +0.6 5,261,695 - -0.9 5,261,718 + -1.2 5,261,718 + -0.4 5,261,726 - +0.1 5,261,726 - -1.3 5,261,726 - +0.4 5,261,726 - +0.7 5,261,741 - +0.3 5,261,862 - +0.1 5,261,862 - +0.3 5,261,893 - -0.4 5,261,932 + -0.1 5,261,944 + -0.3 5,261,951 + +0.5 5,261,959 - -0.6 5,261,961 - -0.7 5,261,977 + -0.3 5,262,009 + TX73_024255 0.14 +0.1 5,262,012 + TX73_024255 0.14 -1.2 5,262,012 + TX73_024255 0.14 +0.2 5,262,015 - TX73_024255 0.15 -1.1 5,262,022 - TX73_024255 0.16 -0.6 5,262,048 - TX73_024255 0.22 -0.2 5,262,069 + TX73_024255 0.26 +0.5 5,262,095 + TX73_024255 0.31 +0.0 5,262,115 + TX73_024255 0.36 +1.1 5,262,162 - TX73_024255 0.45 +0.4 5,262,175 + TX73_024255 0.48 -2.1 5,262,183 - TX73_024255 0.50 -0.1 5,262,183 - TX73_024255 0.50 -0.1 5,262,191 - TX73_024255 0.51 +0.1 5,262,191 - TX73_024255 0.51 -0.1 5,262,230 + TX73_024255 0.59 +0.7 5,262,276 + TX73_024255 0.69 -0.3 5,262,286 + TX73_024255 0.71 -0.1 5,262,294 - TX73_024255 0.72 -0.3 5,262,379 - -0.9 5,262,400 + -0.2 5,262,417 + -0.6 5,262,441 - -0.5 5,262,525 - +0.2 5,262,636 - -0.3 5,262,662 + +0.8 5,262,662 + +0.4 5,262,670 - -0.4 5,262,681 + -1.9 5,262,704 + -0.8 5,262,750 - +0.4 5,262,780 - TX73_024260 0.10 -0.9 5,262,793 + TX73_024260 0.11 -0.6 5,262,798 + TX73_024260 0.11 -0.1 5,262,810 - TX73_024260 0.12 -0.7 5,262,814 + TX73_024260 0.12 -0.6 5,262,952 - TX73_024260 0.18 -1.6 5,262,969 + TX73_024260 0.18 -0.1 5,263,000 - TX73_024260 0.20 -0.9 5,263,038 - TX73_024260 0.21 -0.4 5,263,077 + TX73_024260 0.23 +0.1 5,263,085 - TX73_024260 0.23 +1.3 5,263,108 - TX73_024260 0.24 -0.3 5,263,123 + TX73_024260 0.25 -0.0 5,263,174 + TX73_024260 0.27 +0.0 5,263,192 + TX73_024260 0.28 +1.1 5,263,202 - TX73_024260 0.28 -0.9 5,263,202 - TX73_024260 0.28 -1.2 5,263,202 - TX73_024260 0.28 -0.1 5,263,253 - TX73_024260 0.30 -0.1 5,263,253 - TX73_024260 0.30 -0.5 5,263,262 + TX73_024260 0.31 +1.1 5,263,269 + TX73_024260 0.31 +1.1 5,263,307 + TX73_024260 0.33 +0.3 5,263,377 + TX73_024260 0.36 +0.9 5,263,488 + TX73_024260 0.40 -0.4 5,263,496 - TX73_024260 0.41 +0.2 5,263,496 - TX73_024260 0.41 -0.3 5,263,546 + TX73_024260 0.43 -0.9 5,263,574 - TX73_024260 0.44 +0.0 5,263,586 - TX73_024260 0.45 +0.5 5,263,586 - TX73_024260 0.45 +0.1 5,263,636 + TX73_024260 0.47 -0.1 5,263,661 + TX73_024260 0.48 -0.1 5,263,669 - TX73_024260 0.48 +0.1 5,263,721 - TX73_024260 0.50 -0.5 5,263,781 - TX73_024260 0.53 -1.0 5,263,789 + TX73_024260 0.53 -1.1 5,263,829 + TX73_024260 0.55 -0.2 5,263,868 + TX73_024260 0.56 -1.2 5,263,869 + TX73_024260 0.57 -1.2 5,263,875 + TX73_024260 0.57 -0.1 5,263,883 - TX73_024260 0.57 +3.1 5,263,901 + TX73_024260 0.58 -0.1 5,263,906 + TX73_024260 0.58 -0.4 5,263,906 + TX73_024260 0.58 -0.3 5,263,909 - TX73_024260 0.58 +0.4 5,263,914 + TX73_024260 0.58 +0.4 5,263,929 + TX73_024260 0.59 +1.1 5,263,935 - TX73_024260 0.59 +0.1 5,263,952 + TX73_024260 0.60 +0.5 5,263,991 + TX73_024260 0.62 -0.3 5,264,012 - TX73_024260 0.63 -0.4 5,264,048 + TX73_024260 0.64 -0.3 5,264,048 + TX73_024260 0.64 +0.5 5,264,056 - TX73_024260 0.64 +1.4 5,264,061 - TX73_024260 0.65 -1.1 5,264,061 - TX73_024260 0.65 -1.1 5,264,118 + TX73_024260 0.67 -0.4 5,264,125 + TX73_024260 0.67 +0.1 5,264,126 - TX73_024260 0.67 -0.0 5,264,154 + TX73_024260 0.69 +0.9 5,264,191 + TX73_024260 0.70 -0.8 5,264,216 - TX73_024260 0.71 -0.1 5,264,226 + TX73_024260 0.72 -0.8 5,264,312 - TX73_024260 0.75 -0.2 5,264,338 + TX73_024260 0.76 -0.2 5,264,348 - TX73_024260 0.77 +0.1 5,264,368 + TX73_024260 0.78 -2.4 5,264,399 + TX73_024260 0.79 -1.6 5,264,407 - TX73_024260 0.79 -0.6 5,264,458 - TX73_024260 0.82 +0.2 5,264,474 - TX73_024260 0.82 -0.1 5,264,551 - TX73_024260 0.85 -0.6 5,264,560 + TX73_024260 0.86 -0.5 5,264,566 + TX73_024260 0.86 +0.5 5,264,566 + TX73_024260 0.86 -1.2 5,264,580 + TX73_024260 0.87 -1.0 5,264,581 + TX73_024260 0.87 -0.8 5,264,589 - TX73_024260 0.87 +0.5 5,264,610 - TX73_024260 0.88 -1.1 5,264,645 - TX73_024260 0.89 +0.1 5,264,727 + +0.2 5,264,790 + -0.2 5,264,801 + +0.9 5,264,809 - -0.1 5,264,882 + -0.4 5,264,909 - -0.0 5,264,924 + +0.1 5,264,924 + +1.1 5,264,932 - -0.3 5,264,989 - +0.5 5,265,092 + TX73_024265 0.11 -0.4 5,265,130 + TX73_024265 0.16 -0.5 5,265,130 + TX73_024265 0.16 +0.4 5,265,138 - TX73_024265 0.17 -0.4 5,265,171 + TX73_024265 0.21 +0.1 5,265,179 - TX73_024265 0.22 +0.1 5,265,191 - TX73_024265 0.24 -0.4 5,265,289 + TX73_024265 0.36 +0.4 5,265,307 + TX73_024265 0.38 -0.1 5,265,307 - TX73_024265 0.38 -0.0 5,265,307 - TX73_024265 0.38 +0.3 5,265,371 - TX73_024265 0.46 -0.9 5,265,397 + TX73_024265 0.49 -0.8 5,265,405 - TX73_024265 0.50 -0.1 5,265,443 - TX73_024265 0.55 -0.8 5,265,447 + TX73_024265 0.56 -1.9 5,265,447 + TX73_024265 0.56 +0.2 5,265,453 - TX73_024265 0.56 -1.3 5,265,455 - TX73_024265 0.57 +2.4 5,265,455 - TX73_024265 0.57 +0.2 5,265,455 - TX73_024265 0.57 -1.2 5,265,558 - TX73_024265 0.70 +0.4 5,265,576 + TX73_024265 0.72 +0.2 5,265,584 - TX73_024265 0.73 +0.5 5,265,591 + TX73_024265 0.74 -0.4 5,265,616 + TX73_024265 0.77 -0.1 5,265,633 - TX73_024265 0.79 -1.0 5,265,692 + TX73_024265 0.86 -0.6 5,265,700 - TX73_024265 0.87 -0.5 5,265,745 - -0.2 5,265,754 + -0.6 5,265,784 + +0.8 5,265,792 - +0.2 5,265,804 - -0.8 5,265,819 - +0.2 5,265,843 + -0.2 5,265,843 + -0.1 5,265,843 + +0.4 5,265,849 - +1.5 5,265,851 - -0.3 5,265,882 - +0.2 5,265,889 - -0.1
Or see this region's nucleotide sequence