Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS13170

Experiment: Ying_AminoAcid20 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS13160 and ABIE51_RS13165 are separated by 195 nucleotidesABIE51_RS13165 and ABIE51_RS13170 overlap by 4 nucleotidesABIE51_RS13170 and ABIE51_RS13175 are separated by 97 nucleotidesABIE51_RS13175 and ABIE51_RS13180 are separated by 2 nucleotides ABIE51_RS13160: ABIE51_RS13160 - carboxyl transferase domain-containing protein, at 2,841,315 to 2,842,940 _RS13160 ABIE51_RS13165: ABIE51_RS13165 - polymer-forming cytoskeletal protein, at 2,843,136 to 2,843,738 _RS13165 ABIE51_RS13170: ABIE51_RS13170 - hypothetical protein, at 2,843,735 to 2,844,097 _RS13170 ABIE51_RS13175: ABIE51_RS13175 - DUF6587 family protein, at 2,844,195 to 2,844,449 _RS13175 ABIE51_RS13180: ABIE51_RS13180 - ferrous iron transport protein B, at 2,844,452 to 2,846,308 _RS13180 Position (kb) 2843 2844 2845Strain fitness (log2 ratio) -1 0 1at 2842.768 kb on - strand, within ABIE51_RS13160at 2842.788 kb on + strandat 2842.788 kb on + strandat 2842.789 kb on - strandat 2842.789 kb on - strandat 2842.789 kb on - strandat 2842.791 kb on + strandat 2842.792 kb on - strandat 2842.792 kb on - strandat 2842.995 kb on - strandat 2842.995 kb on - strandat 2843.942 kb on + strand, within ABIE51_RS13170at 2843.943 kb on - strand, within ABIE51_RS13170

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2
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2,842,768 - ABIE51_RS13160 0.89 -0.4
2,842,788 + -0.6
2,842,788 + +0.7
2,842,789 - -1.0
2,842,789 - -1.1
2,842,789 - -0.8
2,842,791 + -0.8
2,842,792 - -0.8
2,842,792 - +0.4
2,842,995 - +0.5
2,842,995 - +0.1
2,843,942 + ABIE51_RS13170 0.57 -0.1
2,843,943 - ABIE51_RS13170 0.57 +1.2

Or see this region's nucleotide sequence