Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS00475

Experiment: Ying_AminoAcid20 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS00465 and ABIE51_RS00470 are separated by 61 nucleotidesABIE51_RS00470 and ABIE51_RS00475 are separated by 76 nucleotidesABIE51_RS00475 and ABIE51_RS00480 are separated by 28 nucleotidesABIE51_RS00480 and ABIE51_RS00485 are separated by 4 nucleotides ABIE51_RS00465: ABIE51_RS00465 - uroporphyrinogen-III C-methyltransferase, at 100,717 to 101,691 _RS00465 ABIE51_RS00470: ABIE51_RS00470 - uroporphyrinogen-III synthase, at 101,753 to 102,484 _RS00470 ABIE51_RS00475: ABIE51_RS00475 - YiiD C-terminal domain-containing protein, at 102,561 to 103,067 _RS00475 ABIE51_RS00480: ABIE51_RS00480 - hypothetical protein, at 103,096 to 103,590 _RS00480 ABIE51_RS00485: ABIE51_RS00485 - rhodanese-like domain-containing protein, at 103,595 to 104,032 _RS00485 Position (kb) 102 103 104Strain fitness (log2 ratio) -2 -1 0 1 2at 101.734 kb on + strandat 101.734 kb on + strandat 102.486 kb on + strandat 102.486 kb on + strandat 102.486 kb on + strandat 102.487 kb on - strandat 102.487 kb on - strandat 102.487 kb on - strandat 102.487 kb on - strandat 102.487 kb on - strandat 102.487 kb on - strandat 102.525 kb on + strandat 102.525 kb on + strandat 102.525 kb on + strandat 102.525 kb on + strandat 102.525 kb on + strandat 102.526 kb on - strandat 102.526 kb on - strandat 102.526 kb on - strandat 102.526 kb on - strandat 102.526 kb on - strandat 102.526 kb on - strandat 102.526 kb on - strandat 102.526 kb on - strandat 102.592 kb on - strandat 102.624 kb on + strand, within ABIE51_RS00475at 102.624 kb on + strand, within ABIE51_RS00475at 102.624 kb on + strand, within ABIE51_RS00475at 102.624 kb on + strand, within ABIE51_RS00475at 102.624 kb on + strand, within ABIE51_RS00475at 102.624 kb on + strand, within ABIE51_RS00475at 102.625 kb on - strand, within ABIE51_RS00475at 102.625 kb on - strand, within ABIE51_RS00475at 102.625 kb on - strand, within ABIE51_RS00475at 102.625 kb on - strand, within ABIE51_RS00475at 102.672 kb on + strand, within ABIE51_RS00475at 102.673 kb on - strand, within ABIE51_RS00475at 102.673 kb on - strand, within ABIE51_RS00475at 102.673 kb on - strand, within ABIE51_RS00475at 102.673 kb on - strand, within ABIE51_RS00475at 102.673 kb on - strand, within ABIE51_RS00475at 102.673 kb on - strand, within ABIE51_RS00475at 102.853 kb on - strand, within ABIE51_RS00475at 103.020 kb on + strandat 103.020 kb on + strandat 103.020 kb on + strandat 103.020 kb on + strandat 103.020 kb on + strandat 103.020 kb on + strandat 103.021 kb on - strandat 103.021 kb on - strandat 103.065 kb on + strandat 103.066 kb on - strandat 103.202 kb on - strand, within ABIE51_RS00480at 103.202 kb on - strand, within ABIE51_RS00480at 103.309 kb on + strand, within ABIE51_RS00480at 103.310 kb on - strand, within ABIE51_RS00480at 103.310 kb on - strand, within ABIE51_RS00480at 103.637 kb on + strandat 103.637 kb on + strandat 103.637 kb on + strandat 103.637 kb on + strandat 103.637 kb on + strandat 103.637 kb on + strandat 103.637 kb on + strandat 103.637 kb on + strandat 103.637 kb on + strandat 103.638 kb on - strandat 103.638 kb on - strandat 103.638 kb on - strandat 103.638 kb on - strandat 103.638 kb on - strandat 103.638 kb on - strandat 103.638 kb on - strandat 103.679 kb on + strand, within ABIE51_RS00485at 103.679 kb on + strand, within ABIE51_RS00485at 103.680 kb on - strand, within ABIE51_RS00485at 103.709 kb on + strand, within ABIE51_RS00485at 103.709 kb on + strand, within ABIE51_RS00485at 103.709 kb on + strand, within ABIE51_RS00485at 103.710 kb on - strand, within ABIE51_RS00485at 103.710 kb on - strand, within ABIE51_RS00485at 103.710 kb on - strand, within ABIE51_RS00485at 103.964 kb on + strand, within ABIE51_RS00485at 103.964 kb on + strand, within ABIE51_RS00485at 103.964 kb on + strand, within ABIE51_RS00485at 103.964 kb on + strand, within ABIE51_RS00485at 103.964 kb on + strand, within ABIE51_RS00485at 103.965 kb on - strand, within ABIE51_RS00485at 103.965 kb on - strand, within ABIE51_RS00485at 103.965 kb on - strand, within ABIE51_RS00485at 103.965 kb on - strand, within ABIE51_RS00485at 103.965 kb on - strand, within ABIE51_RS00485at 103.965 kb on - strand, within ABIE51_RS00485at 103.965 kb on - strand, within ABIE51_RS00485at 103.965 kb on - strand, within ABIE51_RS00485at 103.965 kb on - strand, within ABIE51_RS00485at 103.965 kb on - strand, within ABIE51_RS00485

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
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101,734 + -1.2
101,734 + -1.2
102,486 + -0.8
102,486 + -0.8
102,486 + -1.6
102,487 - -0.0
102,487 - +0.1
102,487 - -0.3
102,487 - +0.2
102,487 - +0.1
102,487 - -0.1
102,525 + -0.4
102,525 + -0.9
102,525 + -0.0
102,525 + -0.2
102,525 + -0.0
102,526 - -0.1
102,526 - +0.1
102,526 - -0.4
102,526 - +0.7
102,526 - -0.2
102,526 - -0.1
102,526 - -0.5
102,526 - -0.6
102,592 - -0.3
102,624 + ABIE51_RS00475 0.12 +0.4
102,624 + ABIE51_RS00475 0.12 +0.6
102,624 + ABIE51_RS00475 0.12 +0.4
102,624 + ABIE51_RS00475 0.12 +0.4
102,624 + ABIE51_RS00475 0.12 -0.0
102,624 + ABIE51_RS00475 0.12 +0.4
102,625 - ABIE51_RS00475 0.13 -0.2
102,625 - ABIE51_RS00475 0.13 +1.1
102,625 - ABIE51_RS00475 0.13 +0.7
102,625 - ABIE51_RS00475 0.13 -0.2
102,672 + ABIE51_RS00475 0.22 +1.8
102,673 - ABIE51_RS00475 0.22 +1.1
102,673 - ABIE51_RS00475 0.22 +1.0
102,673 - ABIE51_RS00475 0.22 +0.1
102,673 - ABIE51_RS00475 0.22 +0.1
102,673 - ABIE51_RS00475 0.22 -1.8
102,673 - ABIE51_RS00475 0.22 -0.4
102,853 - ABIE51_RS00475 0.58 -0.3
103,020 + +1.6
103,020 + -0.2
103,020 + -0.3
103,020 + -0.1
103,020 + +0.2
103,020 + -0.0
103,021 - +0.1
103,021 - -0.3
103,065 + +0.1
103,066 - +0.4
103,202 - ABIE51_RS00480 0.21 -0.6
103,202 - ABIE51_RS00480 0.21 -0.3
103,309 + ABIE51_RS00480 0.43 +0.2
103,310 - ABIE51_RS00480 0.43 -0.4
103,310 - ABIE51_RS00480 0.43 -0.3
103,637 + -1.2
103,637 + -1.2
103,637 + -1.0
103,637 + -0.2
103,637 + -0.9
103,637 + -0.8
103,637 + -1.3
103,637 + -1.4
103,637 + -0.2
103,638 - -1.9
103,638 - +0.2
103,638 - -1.7
103,638 - +0.4
103,638 - -0.8
103,638 - -0.5
103,638 - +1.2
103,679 + ABIE51_RS00485 0.19 -1.2
103,679 + ABIE51_RS00485 0.19 -0.7
103,680 - ABIE51_RS00485 0.19 -0.1
103,709 + ABIE51_RS00485 0.26 -1.2
103,709 + ABIE51_RS00485 0.26 -1.5
103,709 + ABIE51_RS00485 0.26 -1.2
103,710 - ABIE51_RS00485 0.26 -0.7
103,710 - ABIE51_RS00485 0.26 -0.8
103,710 - ABIE51_RS00485 0.26 -0.8
103,964 + ABIE51_RS00485 0.84 -2.0
103,964 + ABIE51_RS00485 0.84 -1.0
103,964 + ABIE51_RS00485 0.84 -1.0
103,964 + ABIE51_RS00485 0.84 -0.6
103,964 + ABIE51_RS00485 0.84 -0.8
103,965 - ABIE51_RS00485 0.84 -0.8
103,965 - ABIE51_RS00485 0.84 +0.2
103,965 - ABIE51_RS00485 0.84 -0.7
103,965 - ABIE51_RS00485 0.84 -0.0
103,965 - ABIE51_RS00485 0.84 +1.0
103,965 - ABIE51_RS00485 0.84 -1.1
103,965 - ABIE51_RS00485 0.84 -0.5
103,965 - ABIE51_RS00485 0.84 -0.2
103,965 - ABIE51_RS00485 0.84 -1.6
103,965 - ABIE51_RS00485 0.84 -0.6

Or see this region's nucleotide sequence