Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS19045

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
4,147,530	+		ABIE51_RS19040	0.12	+0.2
4,147,530	+		ABIE51_RS19040	0.12	+0.9
4,147,530	+		ABIE51_RS19040	0.12	+0.2
4,147,531	-		ABIE51_RS19040	0.12	-0.6
4,147,531	-		ABIE51_RS19040	0.12	-0.3
4,147,531	-		ABIE51_RS19040	0.12	-0.2
4,147,531	-		ABIE51_RS19040	0.12	-0.1
4,147,531	-		ABIE51_RS19040	0.12	-0.1
4,147,531	-		ABIE51_RS19040	0.12	+0.3
4,147,611	+		ABIE51_RS19040	0.19	-0.4
4,147,611	+		ABIE51_RS19040	0.19	+0.8
4,147,967	+		ABIE51_RS19040	0.51	+0.5
4,147,967	+		ABIE51_RS19040	0.51	+0.4
4,147,967	+		ABIE51_RS19040	0.51	+0.0
4,147,967	+		ABIE51_RS19040	0.51	-0.1
4,147,967	+		ABIE51_RS19040	0.51	+0.1
4,147,967	+		ABIE51_RS19040	0.51	+0.3
4,147,967	+		ABIE51_RS19040	0.51	+1.5
4,147,967	+		ABIE51_RS19040	0.51	-0.0
4,147,968	-		ABIE51_RS19040	0.51	-0.6
4,147,968	-		ABIE51_RS19040	0.51	+0.6
4,147,968	-		ABIE51_RS19040	0.51	-0.2
4,147,968	-		ABIE51_RS19040	0.51	-0.2
4,147,968	-		ABIE51_RS19040	0.51	+0.2
4,147,968	-		ABIE51_RS19040	0.51	-1.1
4,147,968	-		ABIE51_RS19040	0.51	-0.1
4,147,968	-		ABIE51_RS19040	0.51	-0.2
4,147,968	-		ABIE51_RS19040	0.51	-0.0
4,147,968	-		ABIE51_RS19040	0.51	+0.3
4,147,968	-		ABIE51_RS19040	0.51	-0.4
4,147,968	-		ABIE51_RS19040	0.51	+0.0
4,147,968	-		ABIE51_RS19040	0.51	-0.1
4,148,021	+		ABIE51_RS19040	0.56	-0.3
4,148,022	-		ABIE51_RS19040	0.56	-0.1
4,148,022	-		ABIE51_RS19040	0.56	+0.8
4,148,084	+		ABIE51_RS19040	0.62	-0.3
4,148,084	+		ABIE51_RS19040	0.62	-0.9
4,148,084	+		ABIE51_RS19040	0.62	+0.4
4,148,084	+		ABIE51_RS19040	0.62	+0.6
4,148,084	+		ABIE51_RS19040	0.62	+0.8
4,148,084	+		ABIE51_RS19040	0.62	+0.0
4,148,085	-		ABIE51_RS19040	0.62	-0.2
4,148,085	-		ABIE51_RS19040	0.62	+0.1
4,148,085	-		ABIE51_RS19040	0.62	-0.1
4,148,085	-		ABIE51_RS19040	0.62	-0.1
4,148,085	-		ABIE51_RS19040	0.62	-0.1
4,148,085	-		ABIE51_RS19040	0.62	-0.2
4,148,085	-		ABIE51_RS19040	0.62	-0.2
4,148,085	-		ABIE51_RS19040	0.62	-0.5
4,148,168	+		ABIE51_RS19040	0.69	+0.4
4,148,168	+		ABIE51_RS19040	0.69	-0.4
4,148,168	+		ABIE51_RS19040	0.69	-0.0
4,148,168	+		ABIE51_RS19040	0.69	+0.1
4,148,168	+		ABIE51_RS19040	0.69	-0.9
4,148,168	+		ABIE51_RS19040	0.69	-0.2
4,148,168	+		ABIE51_RS19040	0.69	+0.6
4,148,169	-		ABIE51_RS19040	0.70	-0.1
4,148,169	-		ABIE51_RS19040	0.70	+0.9
4,148,169	-		ABIE51_RS19040	0.70	-0.2
4,148,169	-		ABIE51_RS19040	0.70	+0.6
4,148,169	-		ABIE51_RS19040	0.70	+0.3
4,148,396	+				+1.2
4,148,396	+				+0.1
4,148,396	+				+0.1
4,148,396	+				-0.3
4,148,396	+				+0.6
4,148,396	+				-0.8
4,148,396	+				-0.2
4,148,396	+				+0.5
4,148,397	-				+0.4
4,148,397	-				-0.1
4,148,397	-				-0.2
4,148,397	-				+0.3
4,148,397	-				+0.2
4,148,397	-				+0.1
4,148,397	-				+0.4
4,148,565	+				-0.6
4,148,565	+				-0.0
4,148,565	+				-0.3
4,148,882	+		ABIE51_RS19045	0.15	-0.5
4,148,882	+		ABIE51_RS19045	0.15	+0.4
4,148,882	+		ABIE51_RS19045	0.15	-0.3
4,148,883	-		ABIE51_RS19045	0.15	-0.2
4,148,883	-		ABIE51_RS19045	0.15	+0.2
4,148,883	-		ABIE51_RS19045	0.15	+0.2
4,148,883	-		ABIE51_RS19045	0.15	+4.5
4,148,883	-		ABIE51_RS19045	0.15	+0.1
4,148,883	-		ABIE51_RS19045	0.15	-0.1
4,148,969	-		ABIE51_RS19045	0.18	+0.8
4,149,148	+		ABIE51_RS19045	0.25	-0.3
4,149,149	-		ABIE51_RS19045	0.25	-0.0
4,149,149	-		ABIE51_RS19045	0.25	-0.0
4,149,204	-		ABIE51_RS19045	0.27	-0.5
4,149,241	+		ABIE51_RS19045	0.29	+0.4
4,149,242	-		ABIE51_RS19045	0.29	+0.1
4,149,400	+		ABIE51_RS19045	0.35	-0.1
4,149,481	+		ABIE51_RS19045	0.38	+0.2
4,149,482	-		ABIE51_RS19045	0.38	-1.0
4,149,482	-		ABIE51_RS19045	0.38	-0.6
4,149,482	-		ABIE51_RS19045	0.38	-0.4
4,149,514	+		ABIE51_RS19045	0.39	-0.0
4,149,514	+		ABIE51_RS19045	0.39	+0.4
4,149,514	+		ABIE51_RS19045	0.39	+0.2
4,149,514	+		ABIE51_RS19045	0.39	+0.4
4,149,514	+		ABIE51_RS19045	0.39	-1.5
4,149,515	-		ABIE51_RS19045	0.39	+0.0
4,149,685	+		ABIE51_RS19045	0.46	+1.0
4,149,686	-		ABIE51_RS19045	0.46	-0.2
4,149,700	+		ABIE51_RS19045	0.46	+0.1
4,149,700	+		ABIE51_RS19045	0.46	+0.4
4,149,707	-		ABIE51_RS19045	0.47	-0.2
4,149,754	+		ABIE51_RS19045	0.48	-0.0
4,149,755	-		ABIE51_RS19045	0.48	-0.7
4,149,755	-		ABIE51_RS19045	0.48	+0.1
4,149,883	+		ABIE51_RS19045	0.53	-0.1
4,149,884	-		ABIE51_RS19045	0.53	+0.7
4,149,884	-		ABIE51_RS19045	0.53	-1.0
4,149,916	+		ABIE51_RS19045	0.55	-0.1
4,149,916	+		ABIE51_RS19045	0.55	+0.3
4,149,916	+		ABIE51_RS19045	0.55	+0.2
4,149,916	+		ABIE51_RS19045	0.55	+0.5
4,149,916	+		ABIE51_RS19045	0.55	+0.2
4,149,916	+		ABIE51_RS19045	0.55	-0.7
4,149,917	-		ABIE51_RS19045	0.55	-0.3
4,150,021	+		ABIE51_RS19045	0.59	-0.5
4,150,021	+		ABIE51_RS19045	0.59	-0.5
4,150,063	+		ABIE51_RS19045	0.60	-0.0
4,150,141	+		ABIE51_RS19045	0.63	+0.2
4,150,141	+		ABIE51_RS19045	0.63	+0.1
4,150,142	-		ABIE51_RS19045	0.63	-0.3
4,150,142	-		ABIE51_RS19045	0.63	+0.0
4,150,142	-		ABIE51_RS19045	0.63	-0.3
4,150,245	+		ABIE51_RS19045	0.67	-0.4
4,150,246	-		ABIE51_RS19045	0.67	-0.3
4,150,246	-		ABIE51_RS19045	0.67	+0.3
4,150,246	-		ABIE51_RS19045	0.67	+0.9
4,150,246	-		ABIE51_RS19045	0.67	+0.0
4,150,246	-		ABIE51_RS19045	0.67	-0.2
4,150,352	+		ABIE51_RS19045	0.72	+0.6
4,150,352	+		ABIE51_RS19045	0.72	-0.1
4,150,353	-		ABIE51_RS19045	0.72	+0.5
4,150,403	-		ABIE51_RS19045	0.74	+0.4
4,150,403	-		ABIE51_RS19045	0.74	-0.2
4,150,482	+		ABIE51_RS19045	0.77	-0.1
4,150,510	+		ABIE51_RS19045	0.78	-0.0
4,150,510	+		ABIE51_RS19045	0.78	+0.2
4,150,511	-		ABIE51_RS19045	0.78	+0.0
4,150,541	-		ABIE51_RS19045	0.79	+0.9
4,150,568	-		ABIE51_RS19045	0.80	+0.6
4,150,568	-		ABIE51_RS19045	0.80	+1.1
4,150,882	+				-0.1
4,151,104	+				-0.3
4,151,104	+				+0.3
4,151,309	+				+0.5
4,151,310	-				+0.2
4,151,465	+		ABIE51_RS19050	0.27	+0.2
4,151,576	+		ABIE51_RS19050	0.42	+0.4
4,151,576	+		ABIE51_RS19050	0.42	-0.6
4,151,576	+		ABIE51_RS19050	0.42	+0.7
4,151,576	+		ABIE51_RS19050	0.42	-0.2
4,151,577	-		ABIE51_RS19050	0.42	+0.2
4,151,577	-		ABIE51_RS19050	0.42	+0.2
4,151,577	-		ABIE51_RS19050	0.42	+0.6
4,151,596	-		ABIE51_RS19050	0.45	-0.3
4,151,653	+		ABIE51_RS19050	0.52	+0.7
4,151,675	+		ABIE51_RS19050	0.55	-0.3
4,151,676	-		ABIE51_RS19050	0.56	-0.3
4,151,676	-		ABIE51_RS19050	0.56	-1.0
4,151,676	-		ABIE51_RS19050	0.56	-0.1
4,151,676	-		ABIE51_RS19050	0.56	-0.1
4,151,676	-		ABIE51_RS19050	0.56	+0.8
4,151,698	+		ABIE51_RS19050	0.59	+0.2
4,151,698	+		ABIE51_RS19050	0.59	-0.3
4,151,698	+		ABIE51_RS19050	0.59	+0.1
4,151,698	+		ABIE51_RS19050	0.59	-0.3
4,151,699	-		ABIE51_RS19050	0.59	+0.5
4,151,699	-		ABIE51_RS19050	0.59	-0.6
4,151,699	-		ABIE51_RS19050	0.59	+0.2
4,151,699	-		ABIE51_RS19050	0.59	+1.1
4,151,699	-		ABIE51_RS19050	0.59	+0.3
4,151,900	+		ABIE51_RS19050	0.86	-0.2
4,151,900	+		ABIE51_RS19050	0.86	+0.4
4,151,900	+		ABIE51_RS19050	0.86	+0.6
4,151,900	+		ABIE51_RS19050	0.86	-0.1
4,151,900	+		ABIE51_RS19050	0.86	+0.3
4,151,901	-		ABIE51_RS19050	0.86	+0.6
4,152,077	+				+0.0
4,152,077	+				+0.4
4,152,078	-				-0.3
4,152,078	-				+0.5
4,152,078	-				+0.5