Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS13805

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
2,995,766	-				+1.1
2,995,836	+		ABIE51_RS13800	0.28	+2.3
2,995,836	+		ABIE51_RS13800	0.28	+2.8
2,995,836	+		ABIE51_RS13800	0.28	+2.2
2,995,836	+		ABIE51_RS13800	0.28	+2.8
2,995,836	+		ABIE51_RS13800	0.28	+2.6
2,995,836	+		ABIE51_RS13800	0.28	+2.8
2,995,837	-		ABIE51_RS13800	0.29	+1.8
2,995,837	-		ABIE51_RS13800	0.29	+2.5
2,995,837	-		ABIE51_RS13800	0.29	+1.9
2,995,837	-		ABIE51_RS13800	0.29	+2.6
2,995,837	-		ABIE51_RS13800	0.29	+2.6
2,995,977	+				+2.5
2,995,978	-				+2.6
2,995,978	-				+3.1
2,996,055	-				+1.8
2,996,238	+		ABIE51_RS13805	0.20	-0.2
2,996,239	-		ABIE51_RS13805	0.21	+0.4
2,996,239	-		ABIE51_RS13805	0.21	+0.1
2,996,239	-		ABIE51_RS13805	0.21	+0.1
2,996,239	-		ABIE51_RS13805	0.21	+0.6
2,996,239	-		ABIE51_RS13805	0.21	-0.2
2,996,367	+		ABIE51_RS13805	0.37	+0.7
2,996,368	-		ABIE51_RS13805	0.37	+0.3
2,996,368	-		ABIE51_RS13805	0.37	+0.2
2,996,442	+		ABIE51_RS13805	0.47	-0.4
2,996,442	+		ABIE51_RS13805	0.47	-0.7
2,996,517	+		ABIE51_RS13805	0.57	-0.7
2,996,517	+		ABIE51_RS13805	0.57	+0.0
2,996,517	+		ABIE51_RS13805	0.57	-0.7
2,996,571	-		ABIE51_RS13805	0.64	+0.3
2,996,644	+		ABIE51_RS13805	0.73	-1.0
2,996,644	+		ABIE51_RS13805	0.73	-0.7
2,996,644	+		ABIE51_RS13805	0.73	-0.2
2,996,644	+		ABIE51_RS13805	0.73	-0.9
2,996,644	+		ABIE51_RS13805	0.73	-0.7
2,996,644	+		ABIE51_RS13805	0.73	-0.4
2,996,644	+		ABIE51_RS13805	0.73	-0.4
2,996,645	-		ABIE51_RS13805	0.74	-0.7
2,996,753	-		ABIE51_RS13805	0.88	+1.5
2,996,753	-		ABIE51_RS13805	0.88	-0.2
2,996,803	+				-0.1
2,996,803	+				+1.5
2,996,803	+				-0.4
2,996,803	+				-0.7
2,996,804	-				-0.4
2,996,867	+				-0.6
2,996,867	+				-0.6
2,996,867	+				-0.7
2,996,868	-				-0.4
2,996,868	-				-0.3
2,996,868	-				-1.4
2,996,901	-				-0.1
2,996,901	-				-0.5
2,996,901	-				-0.4
2,996,913	-		ABIE51_RS13810	0.11	-0.2
2,996,924	+		ABIE51_RS13810	0.13	-0.9
2,996,924	+		ABIE51_RS13810	0.13	-1.0
2,996,925	-		ABIE51_RS13810	0.13	-0.2
2,996,925	-		ABIE51_RS13810	0.13	+0.9
2,996,925	-		ABIE51_RS13810	0.13	-0.2
2,996,951	+		ABIE51_RS13810	0.18	-0.8
2,996,951	+		ABIE51_RS13810	0.18	-0.5
2,996,951	+		ABIE51_RS13810	0.18	-0.7
2,996,952	-		ABIE51_RS13810	0.18	-0.1
2,997,189	+		ABIE51_RS13810	0.59	-0.3
2,997,190	-		ABIE51_RS13810	0.59	-0.6
2,997,190	-		ABIE51_RS13810	0.59	-0.8
2,997,190	-		ABIE51_RS13810	0.59	-0.2
2,997,276	+		ABIE51_RS13810	0.74	-1.0
2,997,276	+		ABIE51_RS13810	0.74	-1.1
2,997,276	+		ABIE51_RS13810	0.74	-1.3
2,997,276	+		ABIE51_RS13810	0.74	-0.6
2,997,277	-		ABIE51_RS13810	0.75	-0.0
2,997,300	+		ABIE51_RS13810	0.79	+0.0
2,997,300	+		ABIE51_RS13810	0.79	-0.6
2,997,459	-				-0.3
2,997,614	+		ABIE51_RS13815	0.19	-1.3
2,997,614	+		ABIE51_RS13815	0.19	-2.0
2,997,614	+		ABIE51_RS13815	0.19	-1.7
2,997,615	-		ABIE51_RS13815	0.19	-0.8