Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS05710

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS05705 and ABIE51_RS05710 are separated by 104 nucleotidesABIE51_RS05710 and ABIE51_RS05715 overlap by 4 nucleotidesABIE51_RS05715 and ABIE51_RS05720 overlap by 4 nucleotides ABIE51_RS05705: ABIE51_RS05705 - glutamyl-tRNA reductase, at 1,226,568 to 1,227,863 _RS05705 ABIE51_RS05710: ABIE51_RS05710 - tetratricopeptide repeat protein, at 1,227,968 to 1,229,650 _RS05710 ABIE51_RS05715: ABIE51_RS05715 - lipoprotein insertase outer membrane protein LolB, at 1,229,647 to 1,230,282 _RS05715 ABIE51_RS05720: ABIE51_RS05720 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 1,230,279 to 1,231,172 _RS05720 Position (kb) 1227 1228 1229 1230Strain fitness (log2 ratio) -1 0 1 2at 1227.921 kb on + strandat 1227.922 kb on - strandat 1227.922 kb on - strandat 1228.151 kb on + strand, within ABIE51_RS05710at 1228.151 kb on + strand, within ABIE51_RS05710at 1228.152 kb on - strand, within ABIE51_RS05710at 1228.724 kb on + strand, within ABIE51_RS05710at 1228.724 kb on + strand, within ABIE51_RS05710at 1228.724 kb on + strand, within ABIE51_RS05710at 1228.724 kb on + strand, within ABIE51_RS05710at 1228.725 kb on - strand, within ABIE51_RS05710at 1228.725 kb on - strand, within ABIE51_RS05710at 1228.742 kb on + strand, within ABIE51_RS05710at 1228.742 kb on + strand, within ABIE51_RS05710at 1228.793 kb on + strand, within ABIE51_RS05710at 1228.793 kb on + strand, within ABIE51_RS05710at 1228.794 kb on - strand, within ABIE51_RS05710at 1228.794 kb on - strand, within ABIE51_RS05710at 1228.853 kb on + strand, within ABIE51_RS05710at 1228.854 kb on - strand, within ABIE51_RS05710at 1228.854 kb on - strand, within ABIE51_RS05710at 1228.854 kb on - strand, within ABIE51_RS05710at 1228.937 kb on + strand, within ABIE51_RS05710at 1228.937 kb on + strand, within ABIE51_RS05710at 1228.938 kb on - strand, within ABIE51_RS05710at 1228.938 kb on - strand, within ABIE51_RS05710at 1229.048 kb on + strand, within ABIE51_RS05710at 1229.048 kb on + strand, within ABIE51_RS05710at 1229.048 kb on + strand, within ABIE51_RS05710at 1229.049 kb on - strand, within ABIE51_RS05710at 1229.049 kb on - strand, within ABIE51_RS05710at 1229.049 kb on - strand, within ABIE51_RS05710at 1229.049 kb on - strand, within ABIE51_RS05710at 1229.049 kb on - strand, within ABIE51_RS05710at 1229.111 kb on + strand, within ABIE51_RS05710at 1229.111 kb on + strand, within ABIE51_RS05710at 1229.112 kb on - strand, within ABIE51_RS05710at 1229.216 kb on + strand, within ABIE51_RS05710at 1229.330 kb on + strand, within ABIE51_RS05710at 1229.330 kb on + strand, within ABIE51_RS05710at 1229.330 kb on + strand, within ABIE51_RS05710at 1229.331 kb on - strand, within ABIE51_RS05710at 1229.331 kb on - strand, within ABIE51_RS05710at 1229.357 kb on + strand, within ABIE51_RS05710at 1229.358 kb on - strand, within ABIE51_RS05710at 1229.358 kb on - strand, within ABIE51_RS05710at 1229.429 kb on + strand, within ABIE51_RS05710at 1229.429 kb on + strand, within ABIE51_RS05710at 1229.429 kb on + strand, within ABIE51_RS05710at 1229.429 kb on + strand, within ABIE51_RS05710at 1229.429 kb on + strand, within ABIE51_RS05710at 1229.429 kb on + strand, within ABIE51_RS05710at 1229.429 kb on + strand, within ABIE51_RS05710at 1229.430 kb on - strand, within ABIE51_RS05710at 1229.430 kb on - strand, within ABIE51_RS05710at 1229.430 kb on - strand, within ABIE51_RS05710at 1229.430 kb on - strand, within ABIE51_RS05710at 1229.430 kb on - strand, within ABIE51_RS05710at 1229.430 kb on - strand, within ABIE51_RS05710at 1229.444 kb on + strand, within ABIE51_RS05710at 1229.444 kb on + strand, within ABIE51_RS05710at 1229.444 kb on + strand, within ABIE51_RS05710at 1229.444 kb on + strand, within ABIE51_RS05710at 1229.445 kb on - strand, within ABIE51_RS05710at 1229.576 kb on + strandat 1229.576 kb on + strandat 1229.576 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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1,227,921 + -0.7
1,227,922 - +0.4
1,227,922 - +0.4
1,228,151 + ABIE51_RS05710 0.11 -0.5
1,228,151 + ABIE51_RS05710 0.11 -1.2
1,228,152 - ABIE51_RS05710 0.11 -0.6
1,228,724 + ABIE51_RS05710 0.45 -0.5
1,228,724 + ABIE51_RS05710 0.45 +0.9
1,228,724 + ABIE51_RS05710 0.45 -0.1
1,228,724 + ABIE51_RS05710 0.45 +0.5
1,228,725 - ABIE51_RS05710 0.45 -1.1
1,228,725 - ABIE51_RS05710 0.45 +0.8
1,228,742 + ABIE51_RS05710 0.46 -0.8
1,228,742 + ABIE51_RS05710 0.46 -1.4
1,228,793 + ABIE51_RS05710 0.49 -0.0
1,228,793 + ABIE51_RS05710 0.49 -0.7
1,228,794 - ABIE51_RS05710 0.49 -0.4
1,228,794 - ABIE51_RS05710 0.49 -1.0
1,228,853 + ABIE51_RS05710 0.53 -0.7
1,228,854 - ABIE51_RS05710 0.53 +0.4
1,228,854 - ABIE51_RS05710 0.53 +0.4
1,228,854 - ABIE51_RS05710 0.53 -0.0
1,228,937 + ABIE51_RS05710 0.58 -0.8
1,228,937 + ABIE51_RS05710 0.58 -0.2
1,228,938 - ABIE51_RS05710 0.58 +2.0
1,228,938 - ABIE51_RS05710 0.58 -1.5
1,229,048 + ABIE51_RS05710 0.64 +0.0
1,229,048 + ABIE51_RS05710 0.64 +0.1
1,229,048 + ABIE51_RS05710 0.64 -0.3
1,229,049 - ABIE51_RS05710 0.64 -0.9
1,229,049 - ABIE51_RS05710 0.64 -0.6
1,229,049 - ABIE51_RS05710 0.64 +1.0
1,229,049 - ABIE51_RS05710 0.64 +0.0
1,229,049 - ABIE51_RS05710 0.64 -1.2
1,229,111 + ABIE51_RS05710 0.68 +0.3
1,229,111 + ABIE51_RS05710 0.68 +0.8
1,229,112 - ABIE51_RS05710 0.68 -1.0
1,229,216 + ABIE51_RS05710 0.74 -0.4
1,229,330 + ABIE51_RS05710 0.81 -0.4
1,229,330 + ABIE51_RS05710 0.81 +0.1
1,229,330 + ABIE51_RS05710 0.81 +1.8
1,229,331 - ABIE51_RS05710 0.81 +0.3
1,229,331 - ABIE51_RS05710 0.81 +0.0
1,229,357 + ABIE51_RS05710 0.83 +0.4
1,229,358 - ABIE51_RS05710 0.83 +0.5
1,229,358 - ABIE51_RS05710 0.83 -0.6
1,229,429 + ABIE51_RS05710 0.87 -0.3
1,229,429 + ABIE51_RS05710 0.87 -0.3
1,229,429 + ABIE51_RS05710 0.87 +1.4
1,229,429 + ABIE51_RS05710 0.87 -0.4
1,229,429 + ABIE51_RS05710 0.87 +0.5
1,229,429 + ABIE51_RS05710 0.87 +0.1
1,229,429 + ABIE51_RS05710 0.87 +0.0
1,229,430 - ABIE51_RS05710 0.87 +1.4
1,229,430 - ABIE51_RS05710 0.87 +0.5
1,229,430 - ABIE51_RS05710 0.87 +0.1
1,229,430 - ABIE51_RS05710 0.87 +0.4
1,229,430 - ABIE51_RS05710 0.87 +1.4
1,229,430 - ABIE51_RS05710 0.87 -0.1
1,229,444 + ABIE51_RS05710 0.88 +0.6
1,229,444 + ABIE51_RS05710 0.88 -0.3
1,229,444 + ABIE51_RS05710 0.88 -0.1
1,229,444 + ABIE51_RS05710 0.88 -0.5
1,229,445 - ABIE51_RS05710 0.88 +0.5
1,229,576 + +0.1
1,229,576 + -0.9
1,229,576 + -0.3

Or see this region's nucleotide sequence