Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS05345

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS05335 and ABIE51_RS05340 are separated by 17 nucleotidesABIE51_RS05340 and ABIE51_RS05345 are separated by 194 nucleotidesABIE51_RS05345 and ABIE51_RS05350 are separated by 132 nucleotides ABIE51_RS05335: ABIE51_RS05335 - diacylglycerol kinase, at 1,157,241 to 1,157,621 _RS05335 ABIE51_RS05340: ABIE51_RS05340 - TerC family protein, at 1,157,639 to 1,158,373 _RS05340 ABIE51_RS05345: ABIE51_RS05345 - LemA family protein, at 1,158,568 to 1,159,233 _RS05345 ABIE51_RS05350: ABIE51_RS05350 - TPM domain-containing protein, at 1,159,366 to 1,160,226 _RS05350 Position (kb) 1158 1159 1160Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1157.627 kb on + strandat 1157.627 kb on + strandat 1157.628 kb on - strandat 1157.759 kb on + strand, within ABIE51_RS05340at 1157.759 kb on + strand, within ABIE51_RS05340at 1157.759 kb on + strand, within ABIE51_RS05340at 1157.760 kb on - strand, within ABIE51_RS05340at 1157.815 kb on + strand, within ABIE51_RS05340at 1158.240 kb on - strand, within ABIE51_RS05340at 1158.240 kb on - strand, within ABIE51_RS05340at 1158.240 kb on - strand, within ABIE51_RS05340at 1158.281 kb on + strand, within ABIE51_RS05340at 1158.281 kb on + strand, within ABIE51_RS05340at 1158.281 kb on + strand, within ABIE51_RS05340at 1158.281 kb on + strand, within ABIE51_RS05340at 1158.281 kb on + strand, within ABIE51_RS05340at 1158.282 kb on - strand, within ABIE51_RS05340at 1158.282 kb on - strand, within ABIE51_RS05340at 1158.282 kb on - strand, within ABIE51_RS05340at 1158.282 kb on - strand, within ABIE51_RS05340at 1158.282 kb on - strand, within ABIE51_RS05340at 1158.282 kb on - strand, within ABIE51_RS05340at 1158.287 kb on + strand, within ABIE51_RS05340at 1158.371 kb on + strandat 1158.631 kb on + strandat 1158.631 kb on + strandat 1158.632 kb on - strandat 1158.694 kb on + strand, within ABIE51_RS05345at 1158.694 kb on + strand, within ABIE51_RS05345at 1158.694 kb on + strand, within ABIE51_RS05345at 1158.694 kb on + strand, within ABIE51_RS05345at 1158.695 kb on - strand, within ABIE51_RS05345at 1158.695 kb on - strand, within ABIE51_RS05345at 1158.695 kb on - strand, within ABIE51_RS05345at 1158.695 kb on - strand, within ABIE51_RS05345at 1158.746 kb on - strand, within ABIE51_RS05345at 1158.910 kb on + strand, within ABIE51_RS05345at 1159.021 kb on + strand, within ABIE51_RS05345at 1159.021 kb on + strand, within ABIE51_RS05345at 1159.021 kb on + strand, within ABIE51_RS05345at 1159.021 kb on + strand, within ABIE51_RS05345at 1159.022 kb on - strand, within ABIE51_RS05345at 1159.022 kb on - strand, within ABIE51_RS05345at 1159.022 kb on - strand, within ABIE51_RS05345at 1159.234 kb on + strandat 1159.235 kb on - strandat 1159.235 kb on - strandat 1159.729 kb on + strand, within ABIE51_RS05350at 1159.729 kb on + strand, within ABIE51_RS05350at 1159.729 kb on + strand, within ABIE51_RS05350at 1159.730 kb on - strand, within ABIE51_RS05350at 1159.730 kb on - strand, within ABIE51_RS05350at 1159.907 kb on + strand, within ABIE51_RS05350at 1159.908 kb on - strand, within ABIE51_RS05350

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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1,157,627 + +0.0
1,157,627 + -0.4
1,157,628 - +0.0
1,157,759 + ABIE51_RS05340 0.16 -4.0
1,157,759 + ABIE51_RS05340 0.16 -1.2
1,157,759 + ABIE51_RS05340 0.16 -1.2
1,157,760 - ABIE51_RS05340 0.16 -1.9
1,157,815 + ABIE51_RS05340 0.24 -0.9
1,158,240 - ABIE51_RS05340 0.82 -2.1
1,158,240 - ABIE51_RS05340 0.82 -0.7
1,158,240 - ABIE51_RS05340 0.82 -1.1
1,158,281 + ABIE51_RS05340 0.87 -0.4
1,158,281 + ABIE51_RS05340 0.87 -1.6
1,158,281 + ABIE51_RS05340 0.87 -0.6
1,158,281 + ABIE51_RS05340 0.87 -1.3
1,158,281 + ABIE51_RS05340 0.87 -1.0
1,158,282 - ABIE51_RS05340 0.87 -0.7
1,158,282 - ABIE51_RS05340 0.87 -1.6
1,158,282 - ABIE51_RS05340 0.87 -0.7
1,158,282 - ABIE51_RS05340 0.87 -1.5
1,158,282 - ABIE51_RS05340 0.87 -1.8
1,158,282 - ABIE51_RS05340 0.87 -1.6
1,158,287 + ABIE51_RS05340 0.88 -1.2
1,158,371 + -0.1
1,158,631 + +0.5
1,158,631 + +1.1
1,158,632 - +1.1
1,158,694 + ABIE51_RS05345 0.19 +0.1
1,158,694 + ABIE51_RS05345 0.19 -0.0
1,158,694 + ABIE51_RS05345 0.19 +0.0
1,158,694 + ABIE51_RS05345 0.19 +0.3
1,158,695 - ABIE51_RS05345 0.19 +0.2
1,158,695 - ABIE51_RS05345 0.19 -0.1
1,158,695 - ABIE51_RS05345 0.19 +0.4
1,158,695 - ABIE51_RS05345 0.19 +0.3
1,158,746 - ABIE51_RS05345 0.27 -0.1
1,158,910 + ABIE51_RS05345 0.51 +0.2
1,159,021 + ABIE51_RS05345 0.68 +0.5
1,159,021 + ABIE51_RS05345 0.68 +0.5
1,159,021 + ABIE51_RS05345 0.68 -0.6
1,159,021 + ABIE51_RS05345 0.68 -0.1
1,159,022 - ABIE51_RS05345 0.68 +0.3
1,159,022 - ABIE51_RS05345 0.68 +0.3
1,159,022 - ABIE51_RS05345 0.68 -0.1
1,159,234 + -0.1
1,159,235 - +1.7
1,159,235 - -0.0
1,159,729 + ABIE51_RS05350 0.42 +0.5
1,159,729 + ABIE51_RS05350 0.42 -0.7
1,159,729 + ABIE51_RS05350 0.42 +0.1
1,159,730 - ABIE51_RS05350 0.42 -0.2
1,159,730 - ABIE51_RS05350 0.42 -0.1
1,159,907 + ABIE51_RS05350 0.63 +0.3
1,159,908 - ABIE51_RS05350 0.63 -0.0

Or see this region's nucleotide sequence