Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02210 and ABIE51_RS02215 are separated by 76 nucleotides ABIE51_RS02215 and ABIE51_RS02220 are separated by 130 nucleotides ABIE51_RS02220 and ABIE51_RS02225 are separated by 198 nucleotides
ABIE51_RS02210: ABIE51_RS02210 - DUF4124 domain-containing protein, at 496,239 to 496,979
_RS02210
ABIE51_RS02215: ABIE51_RS02215 - Sua5/YciO/YrdC/YwlC family protein, at 497,056 to 497,619
_RS02215
ABIE51_RS02220: ABIE51_RS02220 - DNA topoisomerase I, at 497,750 to 500,248
_RS02220
ABIE51_RS02225: ABIE51_RS02225 - RDD family protein, at 500,447 to 501,367
_RS02225
Position (kb) 497
498
499
500
501 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 496.894 kb on + strand, within ABIE51_RS02210 at 496.895 kb on - strand, within ABIE51_RS02210 at 496.895 kb on - strand, within ABIE51_RS02210 at 496.895 kb on - strand, within ABIE51_RS02210 at 496.895 kb on - strand, within ABIE51_RS02210 at 497.578 kb on + strand at 497.579 kb on - strand at 497.630 kb on + strand at 498.066 kb on + strand, within ABIE51_RS02220 at 498.067 kb on - strand, within ABIE51_RS02220 at 498.067 kb on - strand, within ABIE51_RS02220 at 498.104 kb on - strand, within ABIE51_RS02220 at 498.220 kb on - strand, within ABIE51_RS02220 at 500.309 kb on + strand at 500.309 kb on + strand at 500.310 kb on - strand at 500.310 kb on - strand at 500.355 kb on + strand at 500.355 kb on + strand at 500.355 kb on + strand at 500.356 kb on - strand at 500.475 kb on + strand at 500.475 kb on + strand at 500.475 kb on + strand at 500.475 kb on + strand at 500.475 kb on + strand at 500.475 kb on + strand at 500.475 kb on + strand at 500.475 kb on + strand at 500.475 kb on + strand at 500.475 kb on + strand at 500.476 kb on - strand at 500.476 kb on - strand at 500.476 kb on - strand at 500.476 kb on - strand at 500.476 kb on - strand at 500.476 kb on - strand at 500.476 kb on - strand at 500.485 kb on - strand at 500.520 kb on + strand at 500.521 kb on - strand at 500.521 kb on - strand at 500.607 kb on + strand, within ABIE51_RS02225 at 500.608 kb on - strand, within ABIE51_RS02225 at 500.608 kb on - strand, within ABIE51_RS02225 at 500.688 kb on + strand, within ABIE51_RS02225 at 500.688 kb on + strand, within ABIE51_RS02225 at 500.688 kb on + strand, within ABIE51_RS02225 at 500.689 kb on - strand, within ABIE51_RS02225 at 500.697 kb on + strand, within ABIE51_RS02225 at 500.697 kb on + strand, within ABIE51_RS02225 at 500.697 kb on + strand, within ABIE51_RS02225 at 500.697 kb on + strand, within ABIE51_RS02225 at 500.697 kb on + strand, within ABIE51_RS02225 at 500.697 kb on + strand, within ABIE51_RS02225 at 500.697 kb on + strand, within ABIE51_RS02225 at 500.697 kb on + strand, within ABIE51_RS02225 at 500.697 kb on + strand, within ABIE51_RS02225 at 500.697 kb on + strand, within ABIE51_RS02225 at 500.698 kb on - strand, within ABIE51_RS02225 at 500.698 kb on - strand, within ABIE51_RS02225 at 500.698 kb on - strand, within ABIE51_RS02225 at 500.709 kb on + strand, within ABIE51_RS02225 at 500.709 kb on + strand, within ABIE51_RS02225 at 500.709 kb on + strand, within ABIE51_RS02225 at 500.710 kb on - strand, within ABIE51_RS02225 at 500.710 kb on - strand, within ABIE51_RS02225 at 500.710 kb on - strand, within ABIE51_RS02225 at 500.710 kb on - strand, within ABIE51_RS02225 at 500.844 kb on + strand, within ABIE51_RS02225 at 500.844 kb on + strand, within ABIE51_RS02225 at 500.844 kb on + strand, within ABIE51_RS02225 at 500.844 kb on + strand, within ABIE51_RS02225 at 500.844 kb on + strand, within ABIE51_RS02225 at 500.844 kb on + strand, within ABIE51_RS02225 at 500.844 kb on + strand, within ABIE51_RS02225 at 500.844 kb on + strand, within ABIE51_RS02225 at 500.844 kb on + strand, within ABIE51_RS02225 at 500.844 kb on + strand, within ABIE51_RS02225 at 500.844 kb on + strand, within ABIE51_RS02225 at 500.845 kb on - strand, within ABIE51_RS02225 at 500.845 kb on - strand, within ABIE51_RS02225 at 500.845 kb on - strand, within ABIE51_RS02225 at 500.845 kb on - strand, within ABIE51_RS02225 at 500.845 kb on - strand, within ABIE51_RS02225 at 500.845 kb on - strand, within ABIE51_RS02225 at 500.845 kb on - strand, within ABIE51_RS02225 at 500.845 kb on - strand, within ABIE51_RS02225 at 500.845 kb on - strand, within ABIE51_RS02225 at 500.845 kb on - strand, within ABIE51_RS02225 at 500.845 kb on - strand, within ABIE51_RS02225 at 500.845 kb on - strand, within ABIE51_RS02225 at 500.845 kb on - strand, within ABIE51_RS02225 at 500.847 kb on + strand, within ABIE51_RS02225 at 500.848 kb on - strand, within ABIE51_RS02225 at 500.848 kb on - strand, within ABIE51_RS02225 at 500.985 kb on + strand, within ABIE51_RS02225 at 500.985 kb on + strand, within ABIE51_RS02225 at 500.985 kb on + strand, within ABIE51_RS02225 at 500.985 kb on + strand, within ABIE51_RS02225 at 500.985 kb on + strand, within ABIE51_RS02225 at 500.985 kb on + strand, within ABIE51_RS02225 at 500.985 kb on + strand, within ABIE51_RS02225 at 500.985 kb on + strand, within ABIE51_RS02225 at 500.985 kb on + strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.986 kb on - strand, within ABIE51_RS02225 at 500.988 kb on + strand, within ABIE51_RS02225 at 500.988 kb on + strand, within ABIE51_RS02225 at 500.988 kb on + strand, within ABIE51_RS02225 at 500.989 kb on - strand, within ABIE51_RS02225 at 501.051 kb on + strand, within ABIE51_RS02225 at 501.051 kb on + strand, within ABIE51_RS02225 at 501.051 kb on + strand, within ABIE51_RS02225 at 501.052 kb on - strand, within ABIE51_RS02225 at 501.052 kb on - strand, within ABIE51_RS02225 at 501.052 kb on - strand, within ABIE51_RS02225 at 501.078 kb on + strand, within ABIE51_RS02225 at 501.079 kb on - strand, within ABIE51_RS02225 at 501.079 kb on - strand, within ABIE51_RS02225 at 501.079 kb on - strand, within ABIE51_RS02225 at 501.117 kb on + strand, within ABIE51_RS02225 at 501.118 kb on - strand, within ABIE51_RS02225 at 501.118 kb on - strand, within ABIE51_RS02225 at 501.118 kb on - strand, within ABIE51_RS02225
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 496,894 + ABIE51_RS02210 0.88 -0.6 496,895 - ABIE51_RS02210 0.89 +0.9 496,895 - ABIE51_RS02210 0.89 +0.1 496,895 - ABIE51_RS02210 0.89 +0.3 496,895 - ABIE51_RS02210 0.89 +0.8 497,578 + -1.3 497,579 - -0.3 497,630 + +0.2 498,066 + ABIE51_RS02220 0.13 -4.1 498,067 - ABIE51_RS02220 0.13 -4.0 498,067 - ABIE51_RS02220 0.13 -4.7 498,104 - ABIE51_RS02220 0.14 -4.6 498,220 - ABIE51_RS02220 0.19 -1.0 500,309 + +0.1 500,309 + -0.9 500,310 - +0.4 500,310 - +0.7 500,355 + +0.4 500,355 + -0.3 500,355 + -0.5 500,356 - +1.5 500,475 + -0.1 500,475 + +0.2 500,475 + +1.1 500,475 + +2.3 500,475 + +0.5 500,475 + +0.1 500,475 + +0.2 500,475 + -0.0 500,475 + +0.0 500,475 + +0.7 500,476 - +1.2 500,476 - +0.9 500,476 - -0.1 500,476 - +0.5 500,476 - +0.7 500,476 - +0.8 500,476 - +1.0 500,485 - +2.8 500,520 + -0.3 500,521 - +1.0 500,521 - +0.3 500,607 + ABIE51_RS02225 0.17 +0.2 500,608 - ABIE51_RS02225 0.17 +0.9 500,608 - ABIE51_RS02225 0.17 +0.1 500,688 + ABIE51_RS02225 0.26 +0.1 500,688 + ABIE51_RS02225 0.26 +0.9 500,688 + ABIE51_RS02225 0.26 +0.9 500,689 - ABIE51_RS02225 0.26 +0.7 500,697 + ABIE51_RS02225 0.27 -0.3 500,697 + ABIE51_RS02225 0.27 -0.2 500,697 + ABIE51_RS02225 0.27 -0.5 500,697 + ABIE51_RS02225 0.27 +0.8 500,697 + ABIE51_RS02225 0.27 -0.1 500,697 + ABIE51_RS02225 0.27 -0.7 500,697 + ABIE51_RS02225 0.27 +1.6 500,697 + ABIE51_RS02225 0.27 +0.5 500,697 + ABIE51_RS02225 0.27 +0.3 500,697 + ABIE51_RS02225 0.27 -0.5 500,698 - ABIE51_RS02225 0.27 +1.0 500,698 - ABIE51_RS02225 0.27 +2.2 500,698 - ABIE51_RS02225 0.27 +0.1 500,709 + ABIE51_RS02225 0.28 +0.3 500,709 + ABIE51_RS02225 0.28 +0.7 500,709 + ABIE51_RS02225 0.28 -0.0 500,710 - ABIE51_RS02225 0.29 +1.1 500,710 - ABIE51_RS02225 0.29 +1.0 500,710 - ABIE51_RS02225 0.29 +1.0 500,710 - ABIE51_RS02225 0.29 -1.0 500,844 + ABIE51_RS02225 0.43 -0.4 500,844 + ABIE51_RS02225 0.43 -0.4 500,844 + ABIE51_RS02225 0.43 +0.4 500,844 + ABIE51_RS02225 0.43 +0.7 500,844 + ABIE51_RS02225 0.43 -0.8 500,844 + ABIE51_RS02225 0.43 -0.1 500,844 + ABIE51_RS02225 0.43 +0.6 500,844 + ABIE51_RS02225 0.43 +1.1 500,844 + ABIE51_RS02225 0.43 +0.6 500,844 + ABIE51_RS02225 0.43 -0.2 500,844 + ABIE51_RS02225 0.43 +0.3 500,845 - ABIE51_RS02225 0.43 +0.2 500,845 - ABIE51_RS02225 0.43 +0.8 500,845 - ABIE51_RS02225 0.43 -0.3 500,845 - ABIE51_RS02225 0.43 +1.2 500,845 - ABIE51_RS02225 0.43 +1.3 500,845 - ABIE51_RS02225 0.43 +0.6 500,845 - ABIE51_RS02225 0.43 +0.5 500,845 - ABIE51_RS02225 0.43 +0.3 500,845 - ABIE51_RS02225 0.43 +0.3 500,845 - ABIE51_RS02225 0.43 +1.1 500,845 - ABIE51_RS02225 0.43 -0.2 500,845 - ABIE51_RS02225 0.43 -0.2 500,845 - ABIE51_RS02225 0.43 -0.1 500,847 + ABIE51_RS02225 0.43 +0.6 500,848 - ABIE51_RS02225 0.44 +0.5 500,848 - ABIE51_RS02225 0.44 +0.8 500,985 + ABIE51_RS02225 0.58 +0.5 500,985 + ABIE51_RS02225 0.58 -0.1 500,985 + ABIE51_RS02225 0.58 -0.9 500,985 + ABIE51_RS02225 0.58 +0.5 500,985 + ABIE51_RS02225 0.58 -0.0 500,985 + ABIE51_RS02225 0.58 +0.6 500,985 + ABIE51_RS02225 0.58 +0.4 500,985 + ABIE51_RS02225 0.58 -0.5 500,985 + ABIE51_RS02225 0.58 -0.2 500,986 - ABIE51_RS02225 0.59 +0.6 500,986 - ABIE51_RS02225 0.59 +0.4 500,986 - ABIE51_RS02225 0.59 -0.2 500,986 - ABIE51_RS02225 0.59 -0.1 500,986 - ABIE51_RS02225 0.59 +0.8 500,986 - ABIE51_RS02225 0.59 +1.3 500,986 - ABIE51_RS02225 0.59 +0.2 500,986 - ABIE51_RS02225 0.59 -0.8 500,986 - ABIE51_RS02225 0.59 -0.3 500,986 - ABIE51_RS02225 0.59 +1.3 500,986 - ABIE51_RS02225 0.59 +0.4 500,986 - ABIE51_RS02225 0.59 +0.3 500,986 - ABIE51_RS02225 0.59 -0.3 500,986 - ABIE51_RS02225 0.59 -0.0 500,986 - ABIE51_RS02225 0.59 +0.3 500,986 - ABIE51_RS02225 0.59 +0.6 500,986 - ABIE51_RS02225 0.59 -0.2 500,986 - ABIE51_RS02225 0.59 +0.4 500,988 + ABIE51_RS02225 0.59 +0.1 500,988 + ABIE51_RS02225 0.59 +0.3 500,988 + ABIE51_RS02225 0.59 -0.5 500,989 - ABIE51_RS02225 0.59 +1.2 501,051 + ABIE51_RS02225 0.66 +0.2 501,051 + ABIE51_RS02225 0.66 +0.1 501,051 + ABIE51_RS02225 0.66 +0.6 501,052 - ABIE51_RS02225 0.66 +1.7 501,052 - ABIE51_RS02225 0.66 +0.9 501,052 - ABIE51_RS02225 0.66 +0.0 501,078 + ABIE51_RS02225 0.69 +0.2 501,079 - ABIE51_RS02225 0.69 -0.4 501,079 - ABIE51_RS02225 0.69 +0.3 501,079 - ABIE51_RS02225 0.69 +1.7 501,117 + ABIE51_RS02225 0.73 +0.0 501,118 - ABIE51_RS02225 0.73 -0.1 501,118 - ABIE51_RS02225 0.73 +1.1 501,118 - ABIE51_RS02225 0.73 +0.5
Or see this region's nucleotide sequence