Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00275 and ABIE51_RS00280 are separated by 173 nucleotides ABIE51_RS00280 and ABIE51_RS00285 are separated by 31 nucleotides ABIE51_RS00285 and ABIE51_RS00290 are separated by 154 nucleotides
ABIE51_RS00275: ABIE51_RS00275 - pitrilysin family protein, at 56,007 to 58,862
_RS00275
ABIE51_RS00280: ABIE51_RS00280 - SDR family oxidoreductase, at 59,036 to 59,746
_RS00280
ABIE51_RS00285: ABIE51_RS00285 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 59,778 to 60,257
_RS00285
ABIE51_RS00290: ABIE51_RS00290 - M20 family metallopeptidase, at 60,412 to 61,794
_RS00290
Position (kb) 59
60
61 Strain fitness (log2 ratio) -2
-1
0
1 at 58.893 kb on + strand at 58.893 kb on + strand at 58.894 kb on - strand at 58.894 kb on - strand at 58.894 kb on - strand at 58.894 kb on - strand at 58.894 kb on - strand at 58.919 kb on + strand at 58.920 kb on - strand at 58.920 kb on - strand at 58.920 kb on - strand at 58.942 kb on + strand at 59.002 kb on + strand at 59.002 kb on + strand at 59.003 kb on - strand at 59.003 kb on - strand at 59.003 kb on - strand at 59.003 kb on - strand at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.507 kb on + strand, within ABIE51_RS00280 at 59.508 kb on - strand, within ABIE51_RS00280 at 59.641 kb on - strand, within ABIE51_RS00280 at 59.641 kb on - strand, within ABIE51_RS00280 at 59.721 kb on - strand at 59.806 kb on - strand at 59.928 kb on + strand, within ABIE51_RS00285 at 59.929 kb on - strand, within ABIE51_RS00285 at 59.929 kb on - strand, within ABIE51_RS00285 at 59.929 kb on - strand, within ABIE51_RS00285 at 59.937 kb on + strand, within ABIE51_RS00285 at 59.937 kb on + strand, within ABIE51_RS00285 at 59.938 kb on - strand, within ABIE51_RS00285 at 60.054 kb on - strand, within ABIE51_RS00285 at 60.063 kb on + strand, within ABIE51_RS00285 at 60.417 kb on + strand at 60.418 kb on - strand at 60.479 kb on + strand at 60.480 kb on - strand at 60.917 kb on + strand, within ABIE51_RS00290 at 60.917 kb on + strand, within ABIE51_RS00290 at 60.918 kb on - strand, within ABIE51_RS00290
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 58,893 + -0.1 58,893 + -0.9 58,894 - -0.1 58,894 - +0.1 58,894 - -1.1 58,894 - +0.4 58,894 - +0.4 58,919 + -0.6 58,920 - +0.2 58,920 - +0.1 58,920 - +0.6 58,942 + +1.0 59,002 + +0.1 59,002 + +0.1 59,003 - -0.1 59,003 - -0.8 59,003 - -0.2 59,003 - -0.2 59,214 + ABIE51_RS00280 0.25 -1.3 59,214 + ABIE51_RS00280 0.25 +0.2 59,214 + ABIE51_RS00280 0.25 +0.1 59,214 + ABIE51_RS00280 0.25 +1.2 59,214 + ABIE51_RS00280 0.25 -0.0 59,214 + ABIE51_RS00280 0.25 +0.3 59,215 - ABIE51_RS00280 0.25 -0.1 59,215 - ABIE51_RS00280 0.25 -1.9 59,215 - ABIE51_RS00280 0.25 +0.0 59,215 - ABIE51_RS00280 0.25 -0.1 59,215 - ABIE51_RS00280 0.25 +0.5 59,507 + ABIE51_RS00280 0.66 +1.0 59,508 - ABIE51_RS00280 0.66 -0.1 59,641 - ABIE51_RS00280 0.85 +0.2 59,641 - ABIE51_RS00280 0.85 +0.6 59,721 - -0.3 59,806 - +0.2 59,928 + ABIE51_RS00285 0.31 +0.4 59,929 - ABIE51_RS00285 0.31 -0.3 59,929 - ABIE51_RS00285 0.31 +0.3 59,929 - ABIE51_RS00285 0.31 -1.3 59,937 + ABIE51_RS00285 0.33 -0.1 59,937 + ABIE51_RS00285 0.33 +0.0 59,938 - ABIE51_RS00285 0.33 -0.3 60,054 - ABIE51_RS00285 0.57 -0.2 60,063 + ABIE51_RS00285 0.59 -0.1 60,417 + -0.6 60,418 - +0.7 60,479 + +0.3 60,480 - +0.6 60,917 + ABIE51_RS00290 0.37 +0.1 60,917 + ABIE51_RS00290 0.37 +0.6 60,918 - ABIE51_RS00290 0.37 -0.1
Or see this region's nucleotide sequence