Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS13880

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
3,010,121	+		ABIE51_RS13875	0.80	-0.9
3,010,121	+		ABIE51_RS13875	0.80	+0.5
3,010,121	+		ABIE51_RS13875	0.80	-0.5
3,010,122	-		ABIE51_RS13875	0.81	-0.5
3,010,122	-		ABIE51_RS13875	0.81	-0.8
3,010,122	-		ABIE51_RS13875	0.81	-0.5
3,010,122	-		ABIE51_RS13875	0.81	-0.1
3,010,122	-		ABIE51_RS13875	0.81	-0.3
3,010,122	-		ABIE51_RS13875	0.81	-0.8
3,010,214	+		ABIE51_RS13875	0.86	-0.9
3,010,215	-		ABIE51_RS13875	0.86	+0.2
3,010,215	-		ABIE51_RS13875	0.86	+0.7
3,010,259	+		ABIE51_RS13875	0.88	-0.7
3,010,259	+		ABIE51_RS13875	0.88	-0.2
3,010,259	+		ABIE51_RS13875	0.88	-0.3
3,010,259	+		ABIE51_RS13875	0.88	-0.8
3,010,259	+		ABIE51_RS13875	0.88	-1.1
3,010,260	-		ABIE51_RS13875	0.88	+0.7
3,010,260	-		ABIE51_RS13875	0.88	-0.5
3,010,260	-		ABIE51_RS13875	0.88	-0.3
3,010,260	-		ABIE51_RS13875	0.88	-1.4
3,010,283	+		ABIE51_RS13875	0.90	-0.2
3,010,283	+		ABIE51_RS13875	0.90	-0.7
3,010,283	+		ABIE51_RS13875	0.90	+0.0
3,010,283	+		ABIE51_RS13875	0.90	-0.6
3,010,284	-		ABIE51_RS13875	0.90	-0.6
3,010,284	-		ABIE51_RS13875	0.90	+1.1
3,010,284	-		ABIE51_RS13875	0.90	-0.9
3,010,284	-		ABIE51_RS13875	0.90	-0.1
3,010,498	+				-0.2
3,010,498	+				+0.5
3,010,498	+				-0.6
3,010,498	+				+0.7
3,010,499	-				-0.3
3,010,505	+				-0.0
3,010,524	+				-0.3
3,010,524	+				-0.2
3,010,524	+				+0.3
3,010,524	+				-0.6
3,010,524	+				-0.0
3,010,524	+				+1.1
3,010,524	+				+0.3
3,010,524	+				-0.2
3,010,524	+				-0.0
3,010,524	+				+1.2
3,010,524	+				+0.0
3,010,524	+				+0.0
3,010,524	+				+0.9
3,010,524	+				+0.1
3,010,524	+				+1.5
3,010,524	+				-0.0
3,010,524	+				+0.4
3,010,524	+				+0.2
3,010,524	+				-0.6
3,010,524	+				+2.2
3,010,525	-				-2.1
3,010,525	-				-0.3
3,010,525	-				-0.0
3,010,525	-				+0.2
3,010,525	-				+1.3
3,010,525	-				-0.1
3,010,525	-				+0.6
3,010,525	-				+0.2
3,010,525	-				+0.0
3,010,525	-				+0.1
3,010,525	-				-0.2
3,010,525	-				-0.7
3,010,525	-				+0.2
3,010,525	-				-0.4
3,010,525	-				+0.2
3,010,525	-				+0.6
3,010,525	-				+0.9
3,010,525	-				+0.7
3,010,525	-				+0.5
3,010,525	-				-1.7
3,010,525	-				+0.1
3,010,525	-				+0.0
3,010,525	-				-0.4
3,010,525	-				+0.1
3,010,525	-				+0.4
3,010,525	-				+0.4
3,010,525	-				-0.0
3,010,525	-				+0.1
3,010,525	-				+0.5
3,010,581	+				-0.1
3,010,582	-				-0.5
3,010,585	+				+0.1
3,010,585	+				+0.0
3,010,585	+				-0.1
3,010,585	+				+0.3
3,010,585	+				+0.2
3,010,585	+				+0.8
3,010,585	+				+0.3
3,010,586	-				+0.8
3,010,586	-				+0.4
3,010,586	-				-0.1
3,010,586	-				+0.1
3,010,586	-				+0.0
3,010,586	-				-0.0
3,010,586	-				+0.2
3,010,586	-				+0.0
3,010,586	-				+0.6
3,010,586	-				+0.7
3,010,609	+				+0.2
3,010,609	+				-0.2
3,010,610	-				+0.0
3,010,610	-				+0.5
3,010,633	+				+0.1
3,010,633	+				+0.4
3,010,633	+				-0.4
3,010,634	-				-0.0
3,010,705	+				-0.6
3,010,711	+				-1.0
3,010,711	+				+0.5
3,010,712	-				+0.7
3,010,796	+				-0.2
3,010,796	+				-0.8
3,010,797	-				+0.3
3,010,799	-				+0.6
3,010,799	-				+0.1
3,010,811	+				+0.5
3,010,815	+				+0.4
3,010,815	+				-0.0
3,010,815	+				+0.0
3,010,815	+				+0.3
3,010,816	-				-1.5
3,010,816	-				-0.3
3,010,816	-				-0.5
3,010,816	-				+0.3
3,010,816	-				-0.7
3,010,816	-				-0.0
3,010,816	-				+0.7
3,010,852	+				+0.6
3,010,852	+				-0.3
3,010,852	+				+0.2
3,010,852	+				-0.1
3,010,852	+				-0.5
3,010,853	-				+0.1
3,010,853	-				+0.0
3,010,853	-				+1.1
3,010,853	-				+0.5
3,010,853	-				+0.8
3,010,870	-				+0.9
3,010,870	-				-0.1
3,010,870	-				-0.0
3,010,980	+				+0.9
3,010,980	+				+0.1
3,010,980	+				-0.1
3,010,981	-				-0.2
3,010,981	-				+0.7
3,010,981	-				-0.5
3,010,981	-				-0.1
3,010,981	-				-0.5
3,010,986	+				+0.1
3,010,987	-				-0.3
3,010,987	-				+0.3
3,011,160	+		ABIE51_RS13880	0.13	+0.2
3,011,160	+		ABIE51_RS13880	0.13	-0.1
3,011,161	-		ABIE51_RS13880	0.13	-0.4
3,011,161	-		ABIE51_RS13880	0.13	+0.3
3,011,537	+		ABIE51_RS13880	0.37	-0.1
3,011,537	+		ABIE51_RS13880	0.37	-0.2
3,011,538	-		ABIE51_RS13880	0.37	+0.3
3,011,686	+		ABIE51_RS13880	0.47	+0.2
3,011,686	+		ABIE51_RS13880	0.47	-0.1
3,011,686	+		ABIE51_RS13880	0.47	-0.4
3,011,686	+		ABIE51_RS13880	0.47	-0.4
3,011,686	+		ABIE51_RS13880	0.47	-0.3
3,011,686	+		ABIE51_RS13880	0.47	-0.3
3,011,687	-		ABIE51_RS13880	0.47	-0.2
3,011,687	-		ABIE51_RS13880	0.47	-0.8
3,011,687	-		ABIE51_RS13880	0.47	-0.2
3,011,687	-		ABIE51_RS13880	0.47	-0.1
3,011,687	-		ABIE51_RS13880	0.47	-0.7
3,011,806	+		ABIE51_RS13880	0.55	-0.1
3,011,806	+		ABIE51_RS13880	0.55	+0.1
3,011,806	+		ABIE51_RS13880	0.55	-0.8
3,011,806	+		ABIE51_RS13880	0.55	-0.2
3,011,806	+		ABIE51_RS13880	0.55	-0.5
3,011,806	+		ABIE51_RS13880	0.55	-0.2
3,011,807	-		ABIE51_RS13880	0.55	+0.2
3,011,807	-		ABIE51_RS13880	0.55	-0.1
3,011,807	-		ABIE51_RS13880	0.55	+0.7
3,011,807	-		ABIE51_RS13880	0.55	+0.4
3,011,822	-		ABIE51_RS13880	0.56	-0.3
3,011,982	+		ABIE51_RS13880	0.67	-1.5
3,011,982	+		ABIE51_RS13880	0.67	-0.4
3,011,982	+		ABIE51_RS13880	0.67	-0.8
3,011,983	-		ABIE51_RS13880	0.67	+0.2
3,011,983	-		ABIE51_RS13880	0.67	+0.1
3,011,983	-		ABIE51_RS13880	0.67	-0.1
3,012,050	+		ABIE51_RS13880	0.71	-0.3
3,012,094	+		ABIE51_RS13880	0.74	-1.0
3,012,094	+		ABIE51_RS13880	0.74	-0.6
3,012,094	+		ABIE51_RS13880	0.74	+0.5
3,012,094	+		ABIE51_RS13880	0.74	+0.9
3,012,094	+		ABIE51_RS13880	0.74	-0.4
3,012,095	-		ABIE51_RS13880	0.74	-1.5
3,012,095	-		ABIE51_RS13880	0.74	-0.4
3,012,670	-				-1.7
3,012,670	-				-1.9
3,012,733	-		ABIE51_RS13885	0.14	-1.0
3,012,733	-		ABIE51_RS13885	0.14	-0.4
3,012,733	-		ABIE51_RS13885	0.14	-0.7
3,012,954	-		ABIE51_RS13885	0.38	-1.5
3,013,313	-		ABIE51_RS13885	0.77	-5.2
3,013,354	-		ABIE51_RS13885	0.81	-1.8
3,013,354	-		ABIE51_RS13885	0.81	-1.5
3,013,354	-		ABIE51_RS13885	0.81	-2.4
3,013,354	-		ABIE51_RS13885	0.81	-3.2