Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS10815 and ABIE51_RS10820 are separated by 36 nucleotides ABIE51_RS10820 and ABIE51_RS10825 are separated by 199 nucleotides ABIE51_RS10825 and ABIE51_RS10830 are separated by 24 nucleotides
ABIE51_RS10815: ABIE51_RS10815 - chemotaxis protein CheB, at 2,347,143 to 2,348,123
_RS10815
ABIE51_RS10820: ABIE51_RS10820 - PAS domain-containing sensor histidine kinase, at 2,348,160 to 2,349,275
_RS10820
ABIE51_RS10825: ABIE51_RS10825 - response regulator, at 2,349,475 to 2,349,831
_RS10825
ABIE51_RS10830: ABIE51_RS10830 - MBL fold metallo-hydrolase, at 2,349,856 to 2,350,704
_RS10830
Position (kb) 2348
2349
2350 Strain fitness (log2 ratio) -1
0
1 at 2348.441 kb on - strand, within ABIE51_RS10820 at 2348.926 kb on + strand, within ABIE51_RS10820 at 2348.927 kb on - strand, within ABIE51_RS10820 at 2348.927 kb on - strand, within ABIE51_RS10820 at 2349.070 kb on - strand, within ABIE51_RS10820 at 2349.301 kb on - strand at 2349.511 kb on + strand, within ABIE51_RS10825 at 2350.238 kb on + strand, within ABIE51_RS10830
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 2,348,441 - ABIE51_RS10820 0.25 +0.3 2,348,926 + ABIE51_RS10820 0.69 +0.7 2,348,927 - ABIE51_RS10820 0.69 +0.5 2,348,927 - ABIE51_RS10820 0.69 -0.1 2,349,070 - ABIE51_RS10820 0.82 -0.1 2,349,301 - +0.2 2,349,511 + ABIE51_RS10825 0.10 +1.5 2,350,238 + ABIE51_RS10830 0.45 -0.2
Or see this region's nucleotide sequence