Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06990

Experiment: Ying_sugar7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS06980 and ABIE51_RS06985 are separated by 0 nucleotidesABIE51_RS06985 and ABIE51_RS06990 are separated by 4 nucleotidesABIE51_RS06990 and ABIE51_RS06995 are separated by 7 nucleotides ABIE51_RS06980: ABIE51_RS06980 - [protein-PII] uridylyltransferase, at 1,505,302 to 1,507,936 _RS06980 ABIE51_RS06985: ABIE51_RS06985 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 1,507,937 to 1,508,836 _RS06985 ABIE51_RS06990: ABIE51_RS06990 - Spx/MgsR family RNA polymerase-binding regulatory protein, at 1,508,841 to 1,509,206 _RS06990 ABIE51_RS06995: ABIE51_RS06995 - succinyl-diaminopimelate desuccinylase, at 1,509,214 to 1,510,350 _RS06995 Position (kb) 1508 1509 1510Strain fitness (log2 ratio) -1 0 1at 1508.853 kb on + strandat 1508.919 kb on + strand, within ABIE51_RS06990at 1508.920 kb on - strand, within ABIE51_RS06990at 1508.934 kb on + strand, within ABIE51_RS06990at 1509.097 kb on - strand, within ABIE51_RS06990

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2
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1,508,853 + -0.7
1,508,919 + ABIE51_RS06990 0.21 +0.6
1,508,920 - ABIE51_RS06990 0.22 -0.7
1,508,934 + ABIE51_RS06990 0.25 -0.6
1,509,097 - ABIE51_RS06990 0.70 +0.1

Or see this region's nucleotide sequence