Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS16405

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
3,564,729	+				-0.2
3,564,729	+				+0.1
3,564,729	+				-0.2
3,564,730	-				+0.4
3,564,730	-				+0.1
3,564,730	-				+2.4
3,564,730	-				+0.0
3,564,954	-		ABIE51_RS16400	0.23	-0.1
3,564,974	+		ABIE51_RS16400	0.25	-0.3
3,564,974	+		ABIE51_RS16400	0.25	-0.1
3,564,974	+		ABIE51_RS16400	0.25	+0.5
3,564,974	+		ABIE51_RS16400	0.25	+0.5
3,564,974	+		ABIE51_RS16400	0.25	-1.2
3,564,980	+		ABIE51_RS16400	0.25	-0.5
3,564,980	+		ABIE51_RS16400	0.25	-0.3
3,564,980	+		ABIE51_RS16400	0.25	+0.4
3,564,980	+		ABIE51_RS16400	0.25	+0.2
3,564,980	+		ABIE51_RS16400	0.25	+0.1
3,564,980	+		ABIE51_RS16400	0.25	+0.3
3,564,981	-		ABIE51_RS16400	0.26	+0.1
3,564,981	-		ABIE51_RS16400	0.26	-0.1
3,564,981	-		ABIE51_RS16400	0.26	+0.3
3,564,981	-		ABIE51_RS16400	0.26	-0.7
3,565,016	+		ABIE51_RS16400	0.29	-0.5
3,565,169	+		ABIE51_RS16400	0.45	-0.2
3,565,233	-		ABIE51_RS16400	0.52	+0.1
3,565,281	-		ABIE51_RS16400	0.57	+0.2
3,565,281	-		ABIE51_RS16400	0.57	+0.3
3,565,281	-		ABIE51_RS16400	0.57	+1.0
3,565,572	-		ABIE51_RS16400	0.88	+1.2
3,565,572	-		ABIE51_RS16400	0.88	+0.4
3,565,777	+				+0.3
3,565,837	+				-0.3
3,565,838	-				+0.1
3,565,924	+				-0.2
3,566,140	+		ABIE51_RS16405	0.18	+0.7
3,566,141	-		ABIE51_RS16405	0.18	-0.4
3,566,141	-		ABIE51_RS16405	0.18	+0.3
3,566,284	+		ABIE51_RS16405	0.24	-0.3
3,566,284	+		ABIE51_RS16405	0.24	+0.1
3,566,285	-		ABIE51_RS16405	0.24	-0.5
3,566,285	-		ABIE51_RS16405	0.24	+0.4
3,566,288	-		ABIE51_RS16405	0.24	-0.6
3,566,389	+		ABIE51_RS16405	0.29	+0.8
3,566,431	+		ABIE51_RS16405	0.31	-0.4
3,566,431	+		ABIE51_RS16405	0.31	-0.1
3,566,517	+		ABIE51_RS16405	0.34	-0.2
3,566,599	+		ABIE51_RS16405	0.38	+0.1
3,566,599	+		ABIE51_RS16405	0.38	-1.2
3,566,599	+		ABIE51_RS16405	0.38	-0.1
3,566,600	-		ABIE51_RS16405	0.38	+0.5
3,566,600	-		ABIE51_RS16405	0.38	+0.1
3,566,602	+		ABIE51_RS16405	0.38	+0.2
3,566,819	-		ABIE51_RS16405	0.48	+0.2
3,567,170	+		ABIE51_RS16405	0.63	-0.5
3,567,266	-		ABIE51_RS16405	0.67	+0.5
3,567,532	+		ABIE51_RS16405	0.79	+0.2
3,568,011	+				+0.4
3,568,011	+				+0.4
3,568,011	+				-0.1
3,568,011	+				-0.2
3,568,012	-				+0.7
3,568,210	+				+0.5
3,568,210	+				-0.5
3,568,211	-				+0.0
3,568,211	-				-0.8
3,568,211	-				+0.1
3,568,255	+		ABIE51_RS16410	0.19	+0.2
3,568,255	+		ABIE51_RS16410	0.19	-0.1
3,568,255	+		ABIE51_RS16410	0.19	+0.6
3,568,255	+		ABIE51_RS16410	0.19	+0.3
3,568,256	-		ABIE51_RS16410	0.20	+0.1
3,568,256	-		ABIE51_RS16410	0.20	+0.2
3,568,256	-		ABIE51_RS16410	0.20	-0.5
3,568,378	-		ABIE51_RS16410	0.70	-0.2
3,568,398	+		ABIE51_RS16410	0.79	-0.2
3,568,398	+		ABIE51_RS16410	0.79	-0.2
3,568,425	+				-0.1
3,568,425	+				+0.1
3,568,425	+				-0.0
3,568,426	-				+0.4
3,568,484	-				-1.8
3,568,827	+		ABIE51_RS16415	0.31	+0.6
3,568,827	+		ABIE51_RS16415	0.31	-1.2
3,568,827	+		ABIE51_RS16415	0.31	-2.2
3,568,827	+		ABIE51_RS16415	0.31	-1.2
3,568,827	+		ABIE51_RS16415	0.31	-2.0
3,568,828	-		ABIE51_RS16415	0.31	-1.5
3,568,828	-		ABIE51_RS16415	0.31	-0.4
3,568,828	-		ABIE51_RS16415	0.31	-1.3
3,568,873	+		ABIE51_RS16415	0.36	-0.3
3,568,893	+		ABIE51_RS16415	0.38	-2.0
3,568,894	-		ABIE51_RS16415	0.38	-1.4
3,568,906	-		ABIE51_RS16415	0.40	-1.7
3,568,906	-		ABIE51_RS16415	0.40	-1.5
3,568,941	+		ABIE51_RS16415	0.43	-1.0
3,568,941	+		ABIE51_RS16415	0.43	-0.7
3,568,942	-		ABIE51_RS16415	0.43	-1.4
3,568,942	-		ABIE51_RS16415	0.43	-1.0
3,568,942	-		ABIE51_RS16415	0.43	-0.7
3,568,942	-		ABIE51_RS16415	0.43	-1.3
3,568,942	-		ABIE51_RS16415	0.43	-0.2
3,568,968	+		ABIE51_RS16415	0.46	-0.8