Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS14115 and ABIE51_RS14120 are separated by 138 nucleotides ABIE51_RS14120 and ABIE51_RS14125 are separated by 181 nucleotides ABIE51_RS14125 and ABIE51_RS14130 are separated by 103 nucleotides ABIE51_RS14130 and ABIE51_RS14135 are separated by 41 nucleotides ABIE51_RS14135 and ABIE51_RS14140 are separated by 73 nucleotides
ABIE51_RS14115: ABIE51_RS14115 - enoyl-ACP reductase, at 3,052,773 to 3,053,567
_RS14115
ABIE51_RS14120: ABIE51_RS14120 - peptidyl-prolyl cis-trans isomerase, at 3,053,706 to 3,055,685
_RS14120
ABIE51_RS14125: ABIE51_RS14125 - tRNA-Asp, at 3,055,867 to 3,055,943
_RS14125
ABIE51_RS14130: ABIE51_RS14130 - tRNA-Asp, at 3,056,047 to 3,056,123
_RS14130
ABIE51_RS14135: ABIE51_RS14135 - tRNA-Val, at 3,056,165 to 3,056,239
_RS14135
ABIE51_RS14140: ABIE51_RS14140 - HU family DNA-binding protein, at 3,056,313 to 3,056,585
_RS14140
Position (kb)
3053
3054
3055
3056 Strain fitness (log2 ratio)
-1
0
1 at 3054.183 kb on - strand, within ABIE51_RS14120 at 3054.859 kb on + strand, within ABIE51_RS14120 at 3054.928 kb on + strand, within ABIE51_RS14120 at 3054.929 kb on - strand, within ABIE51_RS14120 at 3054.929 kb on - strand, within ABIE51_RS14120 at 3054.929 kb on - strand, within ABIE51_RS14120 at 3054.979 kb on + strand, within ABIE51_RS14120 at 3054.979 kb on + strand, within ABIE51_RS14120 at 3054.979 kb on + strand, within ABIE51_RS14120 at 3054.980 kb on - strand, within ABIE51_RS14120 at 3054.980 kb on - strand, within ABIE51_RS14120 at 3054.980 kb on - strand, within ABIE51_RS14120 at 3055.222 kb on + strand, within ABIE51_RS14120 at 3055.222 kb on + strand, within ABIE51_RS14120 at 3055.223 kb on - strand, within ABIE51_RS14120 at 3055.231 kb on + strand, within ABIE51_RS14120 at 3055.571 kb on - strand at 3055.588 kb on + strand at 3055.588 kb on + strand at 3055.588 kb on + strand at 3055.589 kb on - strand at 3055.589 kb on - strand at 3055.589 kb on - strand at 3055.589 kb on - strand at 3055.707 kb on - strand at 3055.861 kb on + strand at 3055.862 kb on - strand at 3055.862 kb on - strand at 3055.936 kb on - strand at 3055.936 kb on - strand at 3056.009 kb on + strand at 3056.010 kb on - strand at 3056.013 kb on - strand at 3056.013 kb on - strand at 3056.013 kb on - strand at 3056.013 kb on - strand at 3056.013 kb on - strand at 3056.143 kb on - strand at 3056.143 kb on - strand at 3056.221 kb on - strand, within ABIE51_RS14135 at 3056.232 kb on - strand at 3056.232 kb on - strand at 3056.232 kb on - strand at 3056.232 kb on - strand at 3056.232 kb on - strand at 3056.232 kb on - strand at 3056.232 kb on - strand at 3056.232 kb on - strand at 3056.232 kb on - strand at 3056.232 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 3,054,183 - ABIE51_RS14120 0.24 +0.1 3,054,859 + ABIE51_RS14120 0.58 +0.6 3,054,928 + ABIE51_RS14120 0.62 +0.3 3,054,929 - ABIE51_RS14120 0.62 +0.5 3,054,929 - ABIE51_RS14120 0.62 +0.6 3,054,929 - ABIE51_RS14120 0.62 -0.1 3,054,979 + ABIE51_RS14120 0.64 +0.8 3,054,979 + ABIE51_RS14120 0.64 +0.1 3,054,979 + ABIE51_RS14120 0.64 +0.4 3,054,980 - ABIE51_RS14120 0.64 +0.1 3,054,980 - ABIE51_RS14120 0.64 +0.5 3,054,980 - ABIE51_RS14120 0.64 +0.3 3,055,222 + ABIE51_RS14120 0.77 +0.8 3,055,222 + ABIE51_RS14120 0.77 +0.9 3,055,223 - ABIE51_RS14120 0.77 +0.3 3,055,231 + ABIE51_RS14120 0.77 +0.4 3,055,571 - +0.8 3,055,588 + +0.8 3,055,588 + +0.4 3,055,588 + +0.2 3,055,589 - +0.4 3,055,589 - +0.5 3,055,589 - +0.6 3,055,589 - +0.5 3,055,707 - -0.4 3,055,861 + -0.1 3,055,862 - +1.2 3,055,862 - +0.3 3,055,936 - -0.5 3,055,936 - -0.8 3,056,009 + +1.4 3,056,010 - +0.4 3,056,013 - +0.4 3,056,013 - +0.1 3,056,013 - -0.4 3,056,013 - -0.3 3,056,013 - -0.0 3,056,143 - +1.1 3,056,143 - +0.5 3,056,221 - ABIE51_RS14135 0.75 +0.2 3,056,232 - -0.8 3,056,232 - +0.9 3,056,232 - -1.0 3,056,232 - -0.6 3,056,232 - -0.2 3,056,232 - -0.6 3,056,232 - -0.7 3,056,232 - -1.1 3,056,232 - -0.8 3,056,232 - +0.1
Or see this region's nucleotide sequence