Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS01095

Experiment: Ying_all64 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS01090 and ABIE51_RS01095 are separated by 0 nucleotidesABIE51_RS01095 and ABIE51_RS01100 overlap by 4 nucleotidesABIE51_RS01100 and ABIE51_RS01105 are separated by 48 nucleotides ABIE51_RS01090: ABIE51_RS01090 - APC family permease, at 233,675 to 235,021 _RS01090 ABIE51_RS01095: ABIE51_RS01095 - cell division protein ZapE, at 235,022 to 236,239 _RS01095 ABIE51_RS01100: ABIE51_RS01100 - alpha/beta family hydrolase, at 236,236 to 236,928 _RS01100 ABIE51_RS01105: ABIE51_RS01105 - ExeM/NucH family extracellular endonuclease, at 236,977 to 238,665 _RS01105 Position (kb) 235 236 237Strain fitness (log2 ratio) -2 -1 0 1at 234.110 kb on + strand, within ABIE51_RS01090at 234.422 kb on + strand, within ABIE51_RS01090at 234.422 kb on + strand, within ABIE51_RS01090at 234.423 kb on - strand, within ABIE51_RS01090at 234.423 kb on - strand, within ABIE51_RS01090at 234.441 kb on + strand, within ABIE51_RS01090at 234.442 kb on - strand, within ABIE51_RS01090at 234.968 kb on + strandat 234.968 kb on + strandat 234.968 kb on + strandat 234.968 kb on + strandat 234.969 kb on - strandat 234.969 kb on - strandat 234.969 kb on - strandat 235.120 kb on - strandat 235.151 kb on + strand, within ABIE51_RS01095at 235.151 kb on + strand, within ABIE51_RS01095at 235.151 kb on + strand, within ABIE51_RS01095at 235.174 kb on - strand, within ABIE51_RS01095at 235.174 kb on - strand, within ABIE51_RS01095at 235.284 kb on + strand, within ABIE51_RS01095at 235.284 kb on + strand, within ABIE51_RS01095at 235.285 kb on - strand, within ABIE51_RS01095at 235.313 kb on + strand, within ABIE51_RS01095at 235.510 kb on - strand, within ABIE51_RS01095at 235.530 kb on + strand, within ABIE51_RS01095at 235.530 kb on + strand, within ABIE51_RS01095at 235.531 kb on - strand, within ABIE51_RS01095at 235.531 kb on - strand, within ABIE51_RS01095at 235.531 kb on - strand, within ABIE51_RS01095at 235.602 kb on + strand, within ABIE51_RS01095at 235.602 kb on + strand, within ABIE51_RS01095at 235.603 kb on - strand, within ABIE51_RS01095at 235.603 kb on - strand, within ABIE51_RS01095at 235.968 kb on + strand, within ABIE51_RS01095at 235.968 kb on + strand, within ABIE51_RS01095at 236.019 kb on + strand, within ABIE51_RS01095at 236.019 kb on + strand, within ABIE51_RS01095at 236.084 kb on - strand, within ABIE51_RS01095at 236.178 kb on + strandat 236.179 kb on - strandat 236.247 kb on + strandat 236.247 kb on + strandat 236.247 kb on + strandat 236.247 kb on + strandat 236.248 kb on - strandat 236.248 kb on - strandat 236.248 kb on - strandat 236.248 kb on - strandat 236.248 kb on - strandat 236.248 kb on - strandat 236.248 kb on - strandat 236.248 kb on - strandat 236.248 kb on - strandat 236.248 kb on - strandat 236.293 kb on + strandat 236.399 kb on + strand, within ABIE51_RS01100at 236.399 kb on + strand, within ABIE51_RS01100at 236.400 kb on - strand, within ABIE51_RS01100at 236.400 kb on - strand, within ABIE51_RS01100at 236.401 kb on + strand, within ABIE51_RS01100at 236.401 kb on + strand, within ABIE51_RS01100at 236.401 kb on + strand, within ABIE51_RS01100at 236.402 kb on - strand, within ABIE51_RS01100at 236.402 kb on - strand, within ABIE51_RS01100at 236.402 kb on - strand, within ABIE51_RS01100at 236.402 kb on - strand, within ABIE51_RS01100at 236.564 kb on + strand, within ABIE51_RS01100at 236.565 kb on - strand, within ABIE51_RS01100at 236.952 kb on + strandat 236.952 kb on + strandat 236.952 kb on + strandat 236.952 kb on + strandat 236.953 kb on - strandat 236.953 kb on - strandat 236.953 kb on - strandat 236.953 kb on - strandat 236.953 kb on - strandat 236.978 kb on + strandat 236.978 kb on + strandat 237.161 kb on + strand, within ABIE51_RS01105at 237.167 kb on + strand, within ABIE51_RS01105at 237.167 kb on + strand, within ABIE51_RS01105at 237.167 kb on + strand, within ABIE51_RS01105at 237.167 kb on + strand, within ABIE51_RS01105at 237.167 kb on + strand, within ABIE51_RS01105at 237.167 kb on + strand, within ABIE51_RS01105at 237.167 kb on + strand, within ABIE51_RS01105at 237.168 kb on - strand, within ABIE51_RS01105at 237.168 kb on - strand, within ABIE51_RS01105at 237.168 kb on - strand, within ABIE51_RS01105at 237.168 kb on - strand, within ABIE51_RS01105at 237.168 kb on - strand, within ABIE51_RS01105at 237.168 kb on - strand, within ABIE51_RS01105at 237.168 kb on - strand, within ABIE51_RS01105at 237.168 kb on - strand, within ABIE51_RS01105at 237.168 kb on - strand, within ABIE51_RS01105at 237.168 kb on - strand, within ABIE51_RS01105at 237.168 kb on - strand, within ABIE51_RS01105at 237.168 kb on - strand, within ABIE51_RS01105at 237.168 kb on - strand, within ABIE51_RS01105at 237.173 kb on + strand, within ABIE51_RS01105at 237.173 kb on + strand, within ABIE51_RS01105at 237.173 kb on + strand, within ABIE51_RS01105at 237.173 kb on + strand, within ABIE51_RS01105at 237.173 kb on + strand, within ABIE51_RS01105at 237.174 kb on - strand, within ABIE51_RS01105at 237.174 kb on - strand, within ABIE51_RS01105at 237.174 kb on - strand, within ABIE51_RS01105

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
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234,110 + ABIE51_RS01090 0.32 -0.2
234,422 + ABIE51_RS01090 0.55 +0.2
234,422 + ABIE51_RS01090 0.55 +0.2
234,423 - ABIE51_RS01090 0.56 -0.2
234,423 - ABIE51_RS01090 0.56 +0.8
234,441 + ABIE51_RS01090 0.57 -0.2
234,442 - ABIE51_RS01090 0.57 +0.1
234,968 + +0.4
234,968 + +0.9
234,968 + -0.4
234,968 + -2.0
234,969 - +0.2
234,969 - -0.3
234,969 - +0.2
235,120 - -0.5
235,151 + ABIE51_RS01095 0.11 -1.5
235,151 + ABIE51_RS01095 0.11 -0.4
235,151 + ABIE51_RS01095 0.11 -0.4
235,174 - ABIE51_RS01095 0.12 -0.6
235,174 - ABIE51_RS01095 0.12 +0.8
235,284 + ABIE51_RS01095 0.22 +0.1
235,284 + ABIE51_RS01095 0.22 -0.7
235,285 - ABIE51_RS01095 0.22 -0.9
235,313 + ABIE51_RS01095 0.24 -0.7
235,510 - ABIE51_RS01095 0.40 -0.7
235,530 + ABIE51_RS01095 0.42 -0.8
235,530 + ABIE51_RS01095 0.42 -1.2
235,531 - ABIE51_RS01095 0.42 -0.1
235,531 - ABIE51_RS01095 0.42 -1.2
235,531 - ABIE51_RS01095 0.42 -0.2
235,602 + ABIE51_RS01095 0.48 -1.0
235,602 + ABIE51_RS01095 0.48 -0.9
235,603 - ABIE51_RS01095 0.48 -0.5
235,603 - ABIE51_RS01095 0.48 -0.9
235,968 + ABIE51_RS01095 0.78 -0.8
235,968 + ABIE51_RS01095 0.78 -0.1
236,019 + ABIE51_RS01095 0.82 -1.3
236,019 + ABIE51_RS01095 0.82 -1.1
236,084 - ABIE51_RS01095 0.87 -1.7
236,178 + -2.1
236,179 - -0.1
236,247 + +0.1
236,247 + -0.3
236,247 + +0.3
236,247 + +0.3
236,248 - -0.2
236,248 - -0.3
236,248 - -0.4
236,248 - +0.0
236,248 - +0.3
236,248 - +0.6
236,248 - -0.3
236,248 - -0.5
236,248 - -0.4
236,248 - +0.4
236,293 + -0.5
236,399 + ABIE51_RS01100 0.24 +0.5
236,399 + ABIE51_RS01100 0.24 -0.7
236,400 - ABIE51_RS01100 0.24 +0.4
236,400 - ABIE51_RS01100 0.24 +0.2
236,401 + ABIE51_RS01100 0.24 +0.5
236,401 + ABIE51_RS01100 0.24 -0.4
236,401 + ABIE51_RS01100 0.24 +0.2
236,402 - ABIE51_RS01100 0.24 -0.9
236,402 - ABIE51_RS01100 0.24 +0.1
236,402 - ABIE51_RS01100 0.24 +0.4
236,402 - ABIE51_RS01100 0.24 +0.0
236,564 + ABIE51_RS01100 0.47 -0.2
236,565 - ABIE51_RS01100 0.47 +0.4
236,952 + -0.9
236,952 + +0.0
236,952 + -0.7
236,952 + -0.2
236,953 - +0.1
236,953 - -0.1
236,953 - +0.2
236,953 - -0.4
236,953 - +0.1
236,978 + +0.3
236,978 + -0.1
237,161 + ABIE51_RS01105 0.11 -0.2
237,167 + ABIE51_RS01105 0.11 -0.0
237,167 + ABIE51_RS01105 0.11 +0.2
237,167 + ABIE51_RS01105 0.11 +1.5
237,167 + ABIE51_RS01105 0.11 +0.5
237,167 + ABIE51_RS01105 0.11 -0.3
237,167 + ABIE51_RS01105 0.11 +0.0
237,167 + ABIE51_RS01105 0.11 +1.0
237,168 - ABIE51_RS01105 0.11 -0.2
237,168 - ABIE51_RS01105 0.11 -0.2
237,168 - ABIE51_RS01105 0.11 -0.1
237,168 - ABIE51_RS01105 0.11 -0.1
237,168 - ABIE51_RS01105 0.11 -0.2
237,168 - ABIE51_RS01105 0.11 -0.6
237,168 - ABIE51_RS01105 0.11 +0.4
237,168 - ABIE51_RS01105 0.11 +1.2
237,168 - ABIE51_RS01105 0.11 +0.1
237,168 - ABIE51_RS01105 0.11 -0.0
237,168 - ABIE51_RS01105 0.11 +0.3
237,168 - ABIE51_RS01105 0.11 -0.1
237,168 - ABIE51_RS01105 0.11 +0.2
237,173 + ABIE51_RS01105 0.12 -0.7
237,173 + ABIE51_RS01105 0.12 -0.8
237,173 + ABIE51_RS01105 0.12 -0.1
237,173 + ABIE51_RS01105 0.12 -0.1
237,173 + ABIE51_RS01105 0.12 +0.1
237,174 - ABIE51_RS01105 0.12 +1.5
237,174 - ABIE51_RS01105 0.12 -0.3
237,174 - ABIE51_RS01105 0.12 -0.6

Or see this region's nucleotide sequence