Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS16225

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
3,519,880	+		ABIE51_RS16215	0.26	-1.1
3,520,072	+				+0.5
3,520,072	+				+0.3
3,520,072	+				+0.3
3,520,072	+				-0.3
3,520,072	+				+0.0
3,520,072	+				-0.1
3,520,072	+				+0.1
3,520,072	+				-0.1
3,520,073	-				-0.2
3,520,073	-				-0.2
3,520,073	-				+0.1
3,520,073	-				+0.8
3,520,073	-				+0.4
3,520,073	-				-0.1
3,520,103	-				-0.1
3,520,156	-				-0.4
3,520,422	+		ABIE51_RS16220	0.50	-1.2
3,520,423	-		ABIE51_RS16220	0.51	-0.4
3,520,491	+		ABIE51_RS16220	0.61	+0.1
3,520,492	-		ABIE51_RS16220	0.61	+0.0
3,520,492	-		ABIE51_RS16220	0.61	-0.6
3,520,492	-		ABIE51_RS16220	0.61	-0.2
3,520,754	+				-0.4
3,520,781	+				+0.5
3,520,818	-		ABIE51_RS16225	0.12	-0.0
3,520,821	-		ABIE51_RS16225	0.12	-0.4
3,520,821	-		ABIE51_RS16225	0.12	+2.1
3,520,821	-		ABIE51_RS16225	0.12	-0.2
3,520,821	-		ABIE51_RS16225	0.12	-0.1
3,520,830	-		ABIE51_RS16225	0.14	-0.2
3,520,830	-		ABIE51_RS16225	0.14	+0.4
3,520,833	+		ABIE51_RS16225	0.14	-0.2
3,520,904	+		ABIE51_RS16225	0.26	+0.4
3,520,904	+		ABIE51_RS16225	0.26	-0.1
3,520,904	+		ABIE51_RS16225	0.26	+0.2
3,520,905	-		ABIE51_RS16225	0.26	+0.3
3,521,030	+		ABIE51_RS16225	0.46	+0.5
3,521,030	+		ABIE51_RS16225	0.46	-0.3
3,521,030	+		ABIE51_RS16225	0.46	-0.1
3,521,030	+		ABIE51_RS16225	0.46	+0.7
3,521,031	-		ABIE51_RS16225	0.46	-0.3
3,521,118	+		ABIE51_RS16225	0.60	+0.1
3,521,118	+		ABIE51_RS16225	0.60	-0.5
3,521,141	+		ABIE51_RS16225	0.64	-1.6
3,521,141	+		ABIE51_RS16225	0.64	+0.9
3,521,142	-		ABIE51_RS16225	0.64	-0.1
3,521,402	+				-0.1
3,521,402	+				-0.3
3,521,402	+				-0.4
3,521,403	-				-0.2
3,521,403	-				-0.3
3,521,403	-				+0.4
3,521,403	-				-0.3
3,521,403	-				-0.0
3,521,403	-				-0.0
3,521,403	-				-0.0
3,521,403	-				-0.2
3,521,500	+				+0.5
3,521,500	+				-0.4
3,521,500	+				+0.1
3,521,501	-				-0.5
3,521,501	-				+0.3
3,521,754	-		ABIE51_RS16230	0.30	+0.0
3,521,779	+		ABIE51_RS16230	0.34	-0.8
3,521,779	+		ABIE51_RS16230	0.34	+0.1
3,521,797	+		ABIE51_RS16230	0.36	+1.0
3,521,860	+		ABIE51_RS16230	0.45	-0.1
3,521,860	+		ABIE51_RS16230	0.45	+0.8
3,521,861	-		ABIE51_RS16230	0.45	-0.3
3,521,861	-		ABIE51_RS16230	0.45	+0.0
3,521,861	-		ABIE51_RS16230	0.45	-0.3
3,521,881	+		ABIE51_RS16230	0.48	-0.0
3,521,881	+		ABIE51_RS16230	0.48	-0.1
3,521,881	+		ABIE51_RS16230	0.48	+0.5
3,521,881	+		ABIE51_RS16230	0.48	+0.2
3,521,881	+		ABIE51_RS16230	0.48	-0.0
3,521,882	-		ABIE51_RS16230	0.48	+0.4
3,521,882	-		ABIE51_RS16230	0.48	-0.4
3,521,882	-		ABIE51_RS16230	0.48	+0.0
3,521,882	-		ABIE51_RS16230	0.48	+0.8
3,521,900	+		ABIE51_RS16230	0.50	-0.1
3,521,900	+		ABIE51_RS16230	0.50	+0.1
3,521,900	+		ABIE51_RS16230	0.50	-0.4
3,521,900	+		ABIE51_RS16230	0.50	-0.4
3,521,901	-		ABIE51_RS16230	0.50	-0.1
3,521,901	-		ABIE51_RS16230	0.50	+0.7
3,522,019	+		ABIE51_RS16230	0.67	-1.0
3,522,019	+		ABIE51_RS16230	0.67	-0.3
3,522,019	+		ABIE51_RS16230	0.67	-0.4
3,522,019	+		ABIE51_RS16230	0.67	+0.7
3,522,020	-		ABIE51_RS16230	0.67	+0.0
3,522,020	-		ABIE51_RS16230	0.67	+0.3
3,522,020	-		ABIE51_RS16230	0.67	+0.6
3,522,020	-		ABIE51_RS16230	0.67	+0.7
3,522,020	-		ABIE51_RS16230	0.67	-0.1
3,522,020	-		ABIE51_RS16230	0.67	-0.2
3,522,118	+		ABIE51_RS16230	0.80	+0.3
3,522,118	+		ABIE51_RS16230	0.80	+0.1
3,522,118	+		ABIE51_RS16230	0.80	+0.2
3,522,118	+		ABIE51_RS16230	0.80	+0.0
3,522,118	+		ABIE51_RS16230	0.80	-0.1
3,522,118	+		ABIE51_RS16230	0.80	+0.7
3,522,118	+		ABIE51_RS16230	0.80	+0.0
3,522,118	+		ABIE51_RS16230	0.80	+0.1
3,522,118	+		ABIE51_RS16230	0.80	+0.1
3,522,119	-		ABIE51_RS16230	0.80	-0.4
3,522,119	-		ABIE51_RS16230	0.80	+0.2
3,522,120	+		ABIE51_RS16230	0.80	-0.3
3,522,120	+		ABIE51_RS16230	0.80	+0.2
3,522,121	-		ABIE51_RS16230	0.80	-0.2
3,522,121	-		ABIE51_RS16230	0.80	+1.4
3,522,121	-		ABIE51_RS16230	0.80	+0.4
3,522,121	-		ABIE51_RS16230	0.80	+0.1
3,522,139	+		ABIE51_RS16230	0.83	-0.3
3,522,139	+		ABIE51_RS16230	0.83	-0.1
3,522,139	+		ABIE51_RS16230	0.83	+0.1
3,522,140	-		ABIE51_RS16230	0.83	+0.0
3,522,140	-		ABIE51_RS16230	0.83	+0.9
3,522,140	-		ABIE51_RS16230	0.83	+0.4
3,522,140	-		ABIE51_RS16230	0.83	-1.0
3,522,140	-		ABIE51_RS16230	0.83	-0.1
3,522,211	+				-0.4
3,522,211	+				-0.6
3,522,211	+				-0.1
3,522,211	+				-1.3
3,522,211	+				+1.1
3,522,211	+				-0.6
3,522,211	+				-0.5
3,522,212	-				+1.8
3,522,212	-				+0.3
3,522,212	-				+0.2
3,522,212	-				-1.9