Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00275 and ABIE51_RS00280 are separated by 173 nucleotides ABIE51_RS00280 and ABIE51_RS00285 are separated by 31 nucleotides ABIE51_RS00285 and ABIE51_RS00290 are separated by 154 nucleotides
ABIE51_RS00275: ABIE51_RS00275 - pitrilysin family protein, at 56,007 to 58,862
_RS00275
ABIE51_RS00280: ABIE51_RS00280 - SDR family oxidoreductase, at 59,036 to 59,746
_RS00280
ABIE51_RS00285: ABIE51_RS00285 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 59,778 to 60,257
_RS00285
ABIE51_RS00290: ABIE51_RS00290 - M20 family metallopeptidase, at 60,412 to 61,794
_RS00290
Position (kb) 59
60 Strain fitness (log2 ratio) -1
0
1 at 58.120 kb on + strand, within ABIE51_RS00275 at 58.195 kb on + strand, within ABIE51_RS00275 at 58.196 kb on - strand, within ABIE51_RS00275 at 58.277 kb on - strand, within ABIE51_RS00275 at 58.294 kb on + strand, within ABIE51_RS00275 at 58.294 kb on + strand, within ABIE51_RS00275 at 58.294 kb on + strand, within ABIE51_RS00275 at 58.294 kb on + strand, within ABIE51_RS00275 at 58.295 kb on - strand, within ABIE51_RS00275 at 58.295 kb on - strand, within ABIE51_RS00275 at 58.320 kb on + strand, within ABIE51_RS00275 at 58.320 kb on + strand, within ABIE51_RS00275 at 58.320 kb on + strand, within ABIE51_RS00275 at 58.321 kb on - strand, within ABIE51_RS00275 at 58.331 kb on - strand, within ABIE51_RS00275 at 58.331 kb on - strand, within ABIE51_RS00275 at 58.483 kb on + strand, within ABIE51_RS00275 at 58.483 kb on + strand, within ABIE51_RS00275 at 58.484 kb on - strand, within ABIE51_RS00275 at 58.484 kb on - strand, within ABIE51_RS00275 at 58.484 kb on - strand, within ABIE51_RS00275 at 58.552 kb on + strand, within ABIE51_RS00275 at 58.552 kb on + strand, within ABIE51_RS00275 at 58.652 kb on - strand at 58.652 kb on - strand at 58.652 kb on - strand at 58.757 kb on + strand at 58.893 kb on + strand at 58.893 kb on + strand at 58.894 kb on - strand at 58.894 kb on - strand at 58.894 kb on - strand at 58.894 kb on - strand at 58.894 kb on - strand at 58.919 kb on + strand at 58.920 kb on - strand at 58.920 kb on - strand at 58.920 kb on - strand at 58.942 kb on + strand at 59.002 kb on + strand at 59.002 kb on + strand at 59.003 kb on - strand at 59.003 kb on - strand at 59.003 kb on - strand at 59.003 kb on - strand at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.507 kb on + strand, within ABIE51_RS00280 at 59.508 kb on - strand, within ABIE51_RS00280 at 59.641 kb on - strand, within ABIE51_RS00280 at 59.641 kb on - strand, within ABIE51_RS00280 at 59.721 kb on - strand at 59.806 kb on - strand at 59.928 kb on + strand, within ABIE51_RS00285 at 59.929 kb on - strand, within ABIE51_RS00285 at 59.929 kb on - strand, within ABIE51_RS00285 at 59.929 kb on - strand, within ABIE51_RS00285 at 59.937 kb on + strand, within ABIE51_RS00285 at 59.937 kb on + strand, within ABIE51_RS00285 at 59.938 kb on - strand, within ABIE51_RS00285 at 60.054 kb on - strand, within ABIE51_RS00285 at 60.063 kb on + strand, within ABIE51_RS00285 at 60.417 kb on + strand at 60.418 kb on - strand at 60.479 kb on + strand at 60.480 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 58,120 + ABIE51_RS00275 0.74 -0.3 58,195 + ABIE51_RS00275 0.77 -0.9 58,196 - ABIE51_RS00275 0.77 -0.0 58,277 - ABIE51_RS00275 0.79 +0.4 58,294 + ABIE51_RS00275 0.80 -0.3 58,294 + ABIE51_RS00275 0.80 -0.4 58,294 + ABIE51_RS00275 0.80 +0.4 58,294 + ABIE51_RS00275 0.80 +0.4 58,295 - ABIE51_RS00275 0.80 +0.2 58,295 - ABIE51_RS00275 0.80 +0.0 58,320 + ABIE51_RS00275 0.81 -0.3 58,320 + ABIE51_RS00275 0.81 +0.4 58,320 + ABIE51_RS00275 0.81 +0.2 58,321 - ABIE51_RS00275 0.81 -0.3 58,331 - ABIE51_RS00275 0.81 +0.3 58,331 - ABIE51_RS00275 0.81 +0.1 58,483 + ABIE51_RS00275 0.87 -0.4 58,483 + ABIE51_RS00275 0.87 +0.4 58,484 - ABIE51_RS00275 0.87 +0.4 58,484 - ABIE51_RS00275 0.87 -0.9 58,484 - ABIE51_RS00275 0.87 +0.8 58,552 + ABIE51_RS00275 0.89 +0.4 58,552 + ABIE51_RS00275 0.89 -0.4 58,652 - -0.3 58,652 - +0.3 58,652 - -1.1 58,757 + -0.0 58,893 + +0.1 58,893 + +0.7 58,894 - +0.3 58,894 - -0.2 58,894 - +0.0 58,894 - +0.4 58,894 - -0.3 58,919 + -0.2 58,920 - -0.4 58,920 - +0.7 58,920 - +0.5 58,942 + +1.0 59,002 + +0.0 59,002 + +0.7 59,003 - -0.2 59,003 - -0.4 59,003 - -0.5 59,003 - +0.2 59,214 + ABIE51_RS00280 0.25 -1.3 59,214 + ABIE51_RS00280 0.25 -0.1 59,214 + ABIE51_RS00280 0.25 -0.4 59,214 + ABIE51_RS00280 0.25 +0.2 59,214 + ABIE51_RS00280 0.25 -0.3 59,214 + ABIE51_RS00280 0.25 -0.0 59,215 - ABIE51_RS00280 0.25 -0.2 59,215 - ABIE51_RS00280 0.25 -0.9 59,215 - ABIE51_RS00280 0.25 -0.3 59,215 - ABIE51_RS00280 0.25 -0.5 59,215 - ABIE51_RS00280 0.25 -0.1 59,507 + ABIE51_RS00280 0.66 -0.5 59,508 - ABIE51_RS00280 0.66 +0.1 59,641 - ABIE51_RS00280 0.85 +0.5 59,641 - ABIE51_RS00280 0.85 +0.7 59,721 - -0.1 59,806 - -0.2 59,928 + ABIE51_RS00285 0.31 +0.2 59,929 - ABIE51_RS00285 0.31 -0.4 59,929 - ABIE51_RS00285 0.31 -0.2 59,929 - ABIE51_RS00285 0.31 -0.3 59,937 + ABIE51_RS00285 0.33 -0.1 59,937 + ABIE51_RS00285 0.33 -0.2 59,938 - ABIE51_RS00285 0.33 -0.6 60,054 - ABIE51_RS00285 0.57 -0.1 60,063 + ABIE51_RS00285 0.59 -0.0 60,417 + -0.1 60,418 - -0.7 60,479 + +0.4 60,480 - +0.4
Or see this region's nucleotide sequence