Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18045 and HMPREF1058_RS18040 are separated by 154 nucleotides HMPREF1058_RS18040 and HMPREF1058_RS18035 are separated by 295 nucleotides
HMPREF1058_RS18045: HMPREF1058_RS18045 - cytochrome ubiquinol oxidase subunit I, at 269,433 to 270,935
_RS18045
HMPREF1058_RS18040: HMPREF1058_RS18040 - cytochrome d ubiquinol oxidase subunit II, at 271,090 to 272,235
_RS18040
HMPREF1058_RS18035: HMPREF1058_RS18035 - 6-phosphogluconolactonase, at 272,531 to 273,235
_RS18035
Position (kb) 271
272
273 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 270.176 kb on - strand, within HMPREF1058_RS18045 at 270.318 kb on + strand, within HMPREF1058_RS18045 at 270.322 kb on + strand, within HMPREF1058_RS18045 at 270.372 kb on - strand, within HMPREF1058_RS18045 at 270.528 kb on + strand, within HMPREF1058_RS18045 at 270.530 kb on + strand, within HMPREF1058_RS18045 at 270.530 kb on + strand, within HMPREF1058_RS18045 at 270.562 kb on + strand, within HMPREF1058_RS18045 at 270.629 kb on + strand, within HMPREF1058_RS18045 at 270.630 kb on - strand, within HMPREF1058_RS18045 at 270.630 kb on - strand, within HMPREF1058_RS18045 at 270.631 kb on + strand, within HMPREF1058_RS18045 at 270.631 kb on + strand, within HMPREF1058_RS18045 at 270.679 kb on + strand, within HMPREF1058_RS18045 at 270.780 kb on - strand, within HMPREF1058_RS18045 at 270.780 kb on - strand, within HMPREF1058_RS18045 at 270.833 kb on + strand at 270.884 kb on - strand at 270.884 kb on - strand at 270.927 kb on - strand at 270.976 kb on + strand at 270.990 kb on - strand at 270.999 kb on + strand at 271.000 kb on - strand at 271.081 kb on + strand at 271.082 kb on - strand at 271.098 kb on + strand at 271.100 kb on + strand at 271.127 kb on + strand at 271.127 kb on + strand at 271.318 kb on + strand, within HMPREF1058_RS18040 at 271.319 kb on - strand, within HMPREF1058_RS18040 at 271.434 kb on + strand, within HMPREF1058_RS18040 at 271.434 kb on + strand, within HMPREF1058_RS18040 at 271.439 kb on - strand, within HMPREF1058_RS18040 at 271.465 kb on - strand, within HMPREF1058_RS18040 at 271.470 kb on - strand, within HMPREF1058_RS18040 at 271.743 kb on + strand, within HMPREF1058_RS18040 at 271.744 kb on - strand, within HMPREF1058_RS18040 at 271.761 kb on - strand, within HMPREF1058_RS18040 at 271.832 kb on - strand, within HMPREF1058_RS18040 at 271.833 kb on + strand, within HMPREF1058_RS18040 at 271.844 kb on - strand, within HMPREF1058_RS18040 at 271.962 kb on + strand, within HMPREF1058_RS18040 at 271.997 kb on + strand, within HMPREF1058_RS18040 at 272.000 kb on + strand, within HMPREF1058_RS18040 at 272.025 kb on + strand, within HMPREF1058_RS18040 at 272.025 kb on + strand, within HMPREF1058_RS18040 at 272.026 kb on - strand, within HMPREF1058_RS18040 at 272.028 kb on + strand, within HMPREF1058_RS18040 at 272.033 kb on - strand, within HMPREF1058_RS18040 at 272.038 kb on + strand at 272.122 kb on + strand at 272.138 kb on + strand at 272.155 kb on + strand at 272.158 kb on - strand at 272.160 kb on + strand at 272.164 kb on + strand at 272.181 kb on - strand at 272.196 kb on + strand at 272.230 kb on + strand at 272.253 kb on + strand at 272.253 kb on + strand at 272.342 kb on + strand at 272.342 kb on + strand at 272.343 kb on - strand at 272.363 kb on - strand at 272.460 kb on + strand at 272.461 kb on - strand at 272.461 kb on - strand at 272.469 kb on + strand at 272.470 kb on - strand at 272.498 kb on - strand at 272.520 kb on + strand at 272.529 kb on + strand at 272.533 kb on - strand at 272.538 kb on - strand at 272.550 kb on + strand at 272.551 kb on - strand at 272.564 kb on - strand at 272.582 kb on - strand at 272.584 kb on - strand at 272.584 kb on - strand at 272.672 kb on - strand, within HMPREF1058_RS18035 at 272.710 kb on + strand, within HMPREF1058_RS18035 at 272.728 kb on - strand, within HMPREF1058_RS18035 at 272.748 kb on + strand, within HMPREF1058_RS18035 at 272.800 kb on + strand, within HMPREF1058_RS18035 at 272.801 kb on - strand, within HMPREF1058_RS18035 at 272.801 kb on - strand, within HMPREF1058_RS18035 at 272.826 kb on - strand, within HMPREF1058_RS18035 at 272.889 kb on + strand, within HMPREF1058_RS18035 at 272.889 kb on + strand, within HMPREF1058_RS18035 at 272.938 kb on - strand, within HMPREF1058_RS18035 at 272.938 kb on - strand, within HMPREF1058_RS18035 at 272.957 kb on + strand, within HMPREF1058_RS18035 at 272.958 kb on - strand, within HMPREF1058_RS18035 at 272.958 kb on - strand, within HMPREF1058_RS18035 at 272.963 kb on - strand, within HMPREF1058_RS18035 at 273.066 kb on + strand, within HMPREF1058_RS18035 at 273.066 kb on + strand, within HMPREF1058_RS18035 at 273.066 kb on + strand, within HMPREF1058_RS18035 at 273.067 kb on - strand, within HMPREF1058_RS18035 at 273.113 kb on - strand, within HMPREF1058_RS18035 at 273.137 kb on - strand, within HMPREF1058_RS18035 at 273.173 kb on + strand at 273.174 kb on - strand at 273.176 kb on - strand at 273.176 kb on - strand at 273.183 kb on - strand at 273.204 kb on - strand at 273.217 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 remove 270,176 - HMPREF1058_RS18045 0.49 -2.6 270,318 + HMPREF1058_RS18045 0.59 -3.0 270,322 + HMPREF1058_RS18045 0.59 -2.0 270,372 - HMPREF1058_RS18045 0.62 -2.0 270,528 + HMPREF1058_RS18045 0.73 +0.6 270,530 + HMPREF1058_RS18045 0.73 -0.9 270,530 + HMPREF1058_RS18045 0.73 -2.3 270,562 + HMPREF1058_RS18045 0.75 -2.4 270,629 + HMPREF1058_RS18045 0.80 -2.7 270,630 - HMPREF1058_RS18045 0.80 -1.9 270,630 - HMPREF1058_RS18045 0.80 -2.7 270,631 + HMPREF1058_RS18045 0.80 -2.3 270,631 + HMPREF1058_RS18045 0.80 -1.0 270,679 + HMPREF1058_RS18045 0.83 -1.8 270,780 - HMPREF1058_RS18045 0.90 -4.5 270,780 - HMPREF1058_RS18045 0.90 +0.3 270,833 + -3.9 270,884 - -2.8 270,884 - -0.7 270,927 - -3.1 270,976 + -0.4 270,990 - -3.5 270,999 + +2.2 271,000 - -1.5 271,081 + -2.3 271,082 - -0.7 271,098 + -3.4 271,100 + -0.7 271,127 + -2.2 271,127 + -3.1 271,318 + HMPREF1058_RS18040 0.20 -1.3 271,319 - HMPREF1058_RS18040 0.20 -3.7 271,434 + HMPREF1058_RS18040 0.30 -4.5 271,434 + HMPREF1058_RS18040 0.30 -2.3 271,439 - HMPREF1058_RS18040 0.30 -2.5 271,465 - HMPREF1058_RS18040 0.33 -1.3 271,470 - HMPREF1058_RS18040 0.33 -1.0 271,743 + HMPREF1058_RS18040 0.57 -1.0 271,744 - HMPREF1058_RS18040 0.57 -2.7 271,761 - HMPREF1058_RS18040 0.59 -2.1 271,832 - HMPREF1058_RS18040 0.65 -3.5 271,833 + HMPREF1058_RS18040 0.65 -2.6 271,844 - HMPREF1058_RS18040 0.66 -4.4 271,962 + HMPREF1058_RS18040 0.76 -4.2 271,997 + HMPREF1058_RS18040 0.79 -3.4 272,000 + HMPREF1058_RS18040 0.79 -3.8 272,025 + HMPREF1058_RS18040 0.82 -2.3 272,025 + HMPREF1058_RS18040 0.82 -1.7 272,026 - HMPREF1058_RS18040 0.82 -3.3 272,028 + HMPREF1058_RS18040 0.82 -3.0 272,033 - HMPREF1058_RS18040 0.82 -3.6 272,038 + -0.3 272,122 + -2.8 272,138 + -2.9 272,155 + -2.9 272,158 - -2.1 272,160 + -1.7 272,164 + +0.3 272,181 - -1.9 272,196 + +0.6 272,230 + +0.1 272,253 + +2.7 272,253 + +1.7 272,342 + +0.2 272,342 + +0.7 272,343 - -2.4 272,363 - +2.0 272,460 + -1.5 272,461 - +0.7 272,461 - -2.9 272,469 + -0.7 272,470 - +1.1 272,498 - -2.7 272,520 + -2.3 272,529 + -1.8 272,533 - +0.5 272,538 - -0.1 272,550 + -1.3 272,551 - -1.0 272,564 - -1.3 272,582 - -1.3 272,584 - -1.3 272,584 - -1.3 272,672 - HMPREF1058_RS18035 0.20 +2.0 272,710 + HMPREF1058_RS18035 0.25 -1.5 272,728 - HMPREF1058_RS18035 0.28 +0.5 272,748 + HMPREF1058_RS18035 0.31 -3.0 272,800 + HMPREF1058_RS18035 0.38 +0.6 272,801 - HMPREF1058_RS18035 0.38 +1.1 272,801 - HMPREF1058_RS18035 0.38 -2.6 272,826 - HMPREF1058_RS18035 0.42 -0.5 272,889 + HMPREF1058_RS18035 0.51 -1.9 272,889 + HMPREF1058_RS18035 0.51 +0.6 272,938 - HMPREF1058_RS18035 0.58 +3.0 272,938 - HMPREF1058_RS18035 0.58 -0.4 272,957 + HMPREF1058_RS18035 0.60 -2.9 272,958 - HMPREF1058_RS18035 0.61 +2.4 272,958 - HMPREF1058_RS18035 0.61 -2.6 272,963 - HMPREF1058_RS18035 0.61 +0.2 273,066 + HMPREF1058_RS18035 0.76 +0.1 273,066 + HMPREF1058_RS18035 0.76 +0.2 273,066 + HMPREF1058_RS18035 0.76 +0.8 273,067 - HMPREF1058_RS18035 0.76 +0.3 273,113 - HMPREF1058_RS18035 0.83 -1.7 273,137 - HMPREF1058_RS18035 0.86 -2.0 273,173 + -2.0 273,174 - -2.5 273,176 - +1.2 273,176 - -0.2 273,183 - +1.9 273,204 - +1.0 273,217 - -0.4
Or see this region's nucleotide sequence