Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15835 and HMPREF1058_RS15830 are separated by 23 nucleotides HMPREF1058_RS15830 and HMPREF1058_RS21585 overlap by 8 nucleotides HMPREF1058_RS21585 and HMPREF1058_RS15825 are separated by 95 nucleotides HMPREF1058_RS15825 and HMPREF1058_RS15820 are separated by 52 nucleotides
HMPREF1058_RS15835: HMPREF1058_RS15835 - radical SAM protein, at 823,384 to 824,454
_RS15835
HMPREF1058_RS15830: HMPREF1058_RS15830 - hypothetical protein, at 824,478 to 824,984
_RS15830
HMPREF1058_RS21585: HMPREF1058_RS21585 - hypothetical protein, at 824,977 to 825,129
_RS21585
HMPREF1058_RS15825: HMPREF1058_RS15825 - glycosyltransferase, at 825,225 to 826,403
_RS15825
HMPREF1058_RS15820: HMPREF1058_RS15820 - glycosyltransferase, at 826,456 to 827,544
_RS15820
Position (kb) 825
826
827 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 824.232 kb on - strand, within HMPREF1058_RS15835 at 824.368 kb on + strand at 824.368 kb on + strand at 824.369 kb on - strand at 824.371 kb on - strand at 824.373 kb on + strand at 824.373 kb on + strand at 824.403 kb on - strand at 824.454 kb on + strand at 824.578 kb on + strand, within HMPREF1058_RS15830 at 824.578 kb on + strand, within HMPREF1058_RS15830 at 824.705 kb on + strand, within HMPREF1058_RS15830 at 824.706 kb on - strand, within HMPREF1058_RS15830 at 824.709 kb on + strand, within HMPREF1058_RS15830 at 824.712 kb on + strand, within HMPREF1058_RS15830 at 824.713 kb on - strand, within HMPREF1058_RS15830 at 824.713 kb on - strand, within HMPREF1058_RS15830 at 824.714 kb on + strand, within HMPREF1058_RS15830 at 824.714 kb on + strand, within HMPREF1058_RS15830 at 824.759 kb on + strand, within HMPREF1058_RS15830 at 824.795 kb on + strand, within HMPREF1058_RS15830 at 824.865 kb on + strand, within HMPREF1058_RS15830 at 824.907 kb on - strand, within HMPREF1058_RS15830 at 824.907 kb on - strand, within HMPREF1058_RS15830 at 824.919 kb on + strand, within HMPREF1058_RS15830 at 824.931 kb on - strand, within HMPREF1058_RS15830 at 824.958 kb on + strand at 825.165 kb on - strand at 825.207 kb on - strand at 825.207 kb on - strand at 825.209 kb on - strand at 825.209 kb on - strand at 825.212 kb on - strand at 825.329 kb on + strand at 825.329 kb on + strand at 825.330 kb on - strand at 825.635 kb on + strand, within HMPREF1058_RS15825 at 825.635 kb on + strand, within HMPREF1058_RS15825 at 825.636 kb on - strand, within HMPREF1058_RS15825 at 825.642 kb on + strand, within HMPREF1058_RS15825 at 825.712 kb on + strand, within HMPREF1058_RS15825 at 825.762 kb on - strand, within HMPREF1058_RS15825 at 825.849 kb on - strand, within HMPREF1058_RS15825 at 825.849 kb on - strand, within HMPREF1058_RS15825 at 825.933 kb on - strand, within HMPREF1058_RS15825 at 825.933 kb on - strand, within HMPREF1058_RS15825 at 825.938 kb on + strand, within HMPREF1058_RS15825 at 825.941 kb on - strand, within HMPREF1058_RS15825 at 825.983 kb on + strand, within HMPREF1058_RS15825 at 825.983 kb on + strand, within HMPREF1058_RS15825 at 825.983 kb on + strand, within HMPREF1058_RS15825 at 825.984 kb on - strand, within HMPREF1058_RS15825 at 826.010 kb on - strand, within HMPREF1058_RS15825 at 826.031 kb on - strand, within HMPREF1058_RS15825 at 826.050 kb on + strand, within HMPREF1058_RS15825 at 826.050 kb on + strand, within HMPREF1058_RS15825 at 826.051 kb on - strand, within HMPREF1058_RS15825 at 826.112 kb on + strand, within HMPREF1058_RS15825 at 826.215 kb on + strand, within HMPREF1058_RS15825 at 826.215 kb on + strand, within HMPREF1058_RS15825 at 826.216 kb on - strand, within HMPREF1058_RS15825 at 826.216 kb on - strand, within HMPREF1058_RS15825 at 826.249 kb on + strand, within HMPREF1058_RS15825 at 826.269 kb on + strand, within HMPREF1058_RS15825 at 826.271 kb on + strand, within HMPREF1058_RS15825 at 826.274 kb on + strand, within HMPREF1058_RS15825 at 826.275 kb on - strand, within HMPREF1058_RS15825 at 826.432 kb on + strand at 826.482 kb on + strand at 826.487 kb on - strand at 826.489 kb on + strand at 826.506 kb on - strand at 826.507 kb on + strand at 826.507 kb on + strand at 826.509 kb on + strand at 826.509 kb on + strand at 826.513 kb on - strand at 826.531 kb on + strand at 826.552 kb on + strand at 826.751 kb on + strand, within HMPREF1058_RS15820 at 826.772 kb on - strand, within HMPREF1058_RS15820 at 826.772 kb on - strand, within HMPREF1058_RS15820 at 826.841 kb on - strand, within HMPREF1058_RS15820 at 826.854 kb on + strand, within HMPREF1058_RS15820 at 826.855 kb on - strand, within HMPREF1058_RS15820 at 826.855 kb on - strand, within HMPREF1058_RS15820 at 826.900 kb on - strand, within HMPREF1058_RS15820 at 826.900 kb on - strand, within HMPREF1058_RS15820 at 826.902 kb on - strand, within HMPREF1058_RS15820 at 826.905 kb on + strand, within HMPREF1058_RS15820 at 826.949 kb on - strand, within HMPREF1058_RS15820 at 826.949 kb on - strand, within HMPREF1058_RS15820 at 826.949 kb on - strand, within HMPREF1058_RS15820 at 826.954 kb on + strand, within HMPREF1058_RS15820 at 826.976 kb on - strand, within HMPREF1058_RS15820 at 826.989 kb on + strand, within HMPREF1058_RS15820 at 827.035 kb on + strand, within HMPREF1058_RS15820 at 827.035 kb on + strand, within HMPREF1058_RS15820 at 827.035 kb on + strand, within HMPREF1058_RS15820 at 827.036 kb on - strand, within HMPREF1058_RS15820 at 827.077 kb on - strand, within HMPREF1058_RS15820 at 827.089 kb on + strand, within HMPREF1058_RS15820 at 827.106 kb on + strand, within HMPREF1058_RS15820 at 827.106 kb on + strand, within HMPREF1058_RS15820 at 827.106 kb on + strand, within HMPREF1058_RS15820 at 827.107 kb on - strand, within HMPREF1058_RS15820 at 827.108 kb on + strand, within HMPREF1058_RS15820 at 827.147 kb on - strand, within HMPREF1058_RS15820
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 remove 824,232 - HMPREF1058_RS15835 0.79 -0.5 824,368 + -2.2 824,368 + -0.5 824,369 - -3.6 824,371 - -0.6 824,373 + -0.9 824,373 + +1.2 824,403 - -0.4 824,454 + -0.8 824,578 + HMPREF1058_RS15830 0.20 +1.1 824,578 + HMPREF1058_RS15830 0.20 -0.6 824,705 + HMPREF1058_RS15830 0.45 -2.2 824,706 - HMPREF1058_RS15830 0.45 +0.7 824,709 + HMPREF1058_RS15830 0.46 -3.3 824,712 + HMPREF1058_RS15830 0.46 -0.5 824,713 - HMPREF1058_RS15830 0.46 -0.9 824,713 - HMPREF1058_RS15830 0.46 -3.6 824,714 + HMPREF1058_RS15830 0.47 +1.8 824,714 + HMPREF1058_RS15830 0.47 +0.1 824,759 + HMPREF1058_RS15830 0.55 -2.4 824,795 + HMPREF1058_RS15830 0.63 +0.1 824,865 + HMPREF1058_RS15830 0.76 -1.7 824,907 - HMPREF1058_RS15830 0.85 -1.4 824,907 - HMPREF1058_RS15830 0.85 -0.5 824,919 + HMPREF1058_RS15830 0.87 -0.3 824,931 - HMPREF1058_RS15830 0.89 +0.1 824,958 + -2.8 825,165 - +0.3 825,207 - -0.5 825,207 - -0.6 825,209 - +1.2 825,209 - -1.2 825,212 - -0.9 825,329 + -0.7 825,329 + +0.7 825,330 - -0.4 825,635 + HMPREF1058_RS15825 0.35 +0.5 825,635 + HMPREF1058_RS15825 0.35 +0.6 825,636 - HMPREF1058_RS15825 0.35 -1.9 825,642 + HMPREF1058_RS15825 0.35 -1.7 825,712 + HMPREF1058_RS15825 0.41 +0.5 825,762 - HMPREF1058_RS15825 0.46 -1.8 825,849 - HMPREF1058_RS15825 0.53 -2.0 825,849 - HMPREF1058_RS15825 0.53 -0.1 825,933 - HMPREF1058_RS15825 0.60 -2.2 825,933 - HMPREF1058_RS15825 0.60 +1.2 825,938 + HMPREF1058_RS15825 0.60 -2.3 825,941 - HMPREF1058_RS15825 0.61 +1.1 825,983 + HMPREF1058_RS15825 0.64 -0.5 825,983 + HMPREF1058_RS15825 0.64 -1.1 825,983 + HMPREF1058_RS15825 0.64 -0.1 825,984 - HMPREF1058_RS15825 0.64 -2.2 826,010 - HMPREF1058_RS15825 0.67 -0.7 826,031 - HMPREF1058_RS15825 0.68 -1.2 826,050 + HMPREF1058_RS15825 0.70 -1.6 826,050 + HMPREF1058_RS15825 0.70 +0.0 826,051 - HMPREF1058_RS15825 0.70 -1.2 826,112 + HMPREF1058_RS15825 0.75 -1.3 826,215 + HMPREF1058_RS15825 0.84 +0.1 826,215 + HMPREF1058_RS15825 0.84 +0.1 826,216 - HMPREF1058_RS15825 0.84 -0.9 826,216 - HMPREF1058_RS15825 0.84 -1.0 826,249 + HMPREF1058_RS15825 0.87 -0.1 826,269 + HMPREF1058_RS15825 0.89 -0.7 826,271 + HMPREF1058_RS15825 0.89 -2.4 826,274 + HMPREF1058_RS15825 0.89 +1.0 826,275 - HMPREF1058_RS15825 0.89 -0.7 826,432 + +1.3 826,482 + +1.2 826,487 - +0.9 826,489 + +0.9 826,506 - -2.7 826,507 + -0.6 826,507 + +0.8 826,509 + -2.0 826,509 + +0.6 826,513 - +0.4 826,531 + +1.7 826,552 + +0.2 826,751 + HMPREF1058_RS15820 0.27 +1.5 826,772 - HMPREF1058_RS15820 0.29 -0.8 826,772 - HMPREF1058_RS15820 0.29 -1.4 826,841 - HMPREF1058_RS15820 0.35 +0.2 826,854 + HMPREF1058_RS15820 0.37 -1.6 826,855 - HMPREF1058_RS15820 0.37 -3.0 826,855 - HMPREF1058_RS15820 0.37 +0.7 826,900 - HMPREF1058_RS15820 0.41 -0.4 826,900 - HMPREF1058_RS15820 0.41 -0.2 826,902 - HMPREF1058_RS15820 0.41 -1.7 826,905 + HMPREF1058_RS15820 0.41 -1.7 826,949 - HMPREF1058_RS15820 0.45 +0.9 826,949 - HMPREF1058_RS15820 0.45 -1.3 826,949 - HMPREF1058_RS15820 0.45 -0.8 826,954 + HMPREF1058_RS15820 0.46 -2.3 826,976 - HMPREF1058_RS15820 0.48 -3.1 826,989 + HMPREF1058_RS15820 0.49 +0.3 827,035 + HMPREF1058_RS15820 0.53 +0.4 827,035 + HMPREF1058_RS15820 0.53 +0.3 827,035 + HMPREF1058_RS15820 0.53 +0.8 827,036 - HMPREF1058_RS15820 0.53 -0.4 827,077 - HMPREF1058_RS15820 0.57 +0.1 827,089 + HMPREF1058_RS15820 0.58 +1.1 827,106 + HMPREF1058_RS15820 0.60 -0.5 827,106 + HMPREF1058_RS15820 0.60 -2.1 827,106 + HMPREF1058_RS15820 0.60 +0.9 827,107 - HMPREF1058_RS15820 0.60 -3.2 827,108 + HMPREF1058_RS15820 0.60 +0.8 827,147 - HMPREF1058_RS15820 0.63 +0.7
Or see this region's nucleotide sequence